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28 protocols using epics elite

1

Apoptosis and Necrosis Detection in Saos-2 Cells

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To distinguish between apoptosis and necrosis, Saos-2 cells and normal osteoblasts were seeded in 6-well plates (2 × 105 cells/well). After drug treatment for 6, 12, 24, and 48 hours, cells were collected and stained using the Annexin V-FITC Apoptosis Detection Kit (Roche, Mannheim, Germany) at room temperature in the dark, and then filtered with a 41-µm filter right before analysis. Cells (1 × 104) were counted by laser flow cytometer (EPICS Elite; Coulter, Hialeah, FL) to detect cells undergoing apoptosis or necrosis, and data were analyzed by Winmidi software (EPICS Elite, Coulter Hialeah, FL).
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2

Cell Cycle Analysis via Flow Cytometry

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After 18 h of drug treatment, the cells were detached and flushed with Hank’s buffered solution to prevent aggregation. After centrifugation, the cells were fixed with ice-cold 70% alcohol and incubated at 4 °C for 30 min. Cell membranes were permeated with 0.1% Triton X-100, and RNA was digested with 20 mg/mL of RNase at 37 °C for 1 h. The cells were subsequently stained with 50 mg/mL of propidium iodide (PI, Sigma, St. Louis, MO, USA) in the dark and then filtered (pore size: 41 mm) immediately before analysis. The DNA concentration of an individual cell was measured using a laser flow cytometer. The PI signals were measured on FL3 with a 610/20 nm bandpass filter (EPICS Elite; Beckman Coulter, Hialeah, FL, USA). Aggregation cells and cell debris were excluded. For DNA concentration analysis, live cells were gated with Expo 32™ v1.2 software and used for quantification of cell cycle distribution with WinCycle software (EPICS Elite; Beckman Coulter, Brea, CA, USA).
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3

Keratinocyte Sorting and Fluorescence Analysis

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Cultured keratinocytes were harvested and resuspended in PBS and subsequently sorted on an EPICS Elite flow cytometer (Coulter, Luton, United Kingdom) that detects fluorescent signals. Viable cells were separated from dead cells based on morphology and amount of propidium iodide uptake and analyzed for eGFP expression. In addition, keratinocyte suspensions were analyzed directly by fluorescence microscopy.
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4

Quantification of Apoptotic Cells

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The apoptotic cells were quantified according to the instructions provided in an Annexin V-FITC (Sigma-Aldrich, St. Louis, MO, USA) cell apoptosis assay kit. Briefly, about 1.5 × 105 cells were plated in 96-well plates and treated with galaxamide and its representative analogues (0, 2.5, 5, and 10 µg/mL) for 48 h. The cells were then resuspended in a 200-mL binding buffer. Afterward, 5 mL of annexin V-fluorescein isothiocyanate (FITC) was added, followed by incubation in darkness at room temperature for 10 min. The cells were again resuspended in 200 mL binding buffer and stained with 5 mL PI. The prepared cells were then analyzed using a flow cytometry (Coulter Epics Elite, Miami, FL, USA). The cells in the FITC-positive and PI-negative fractions were regarded as apoptotic cells.
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5

Quantification of Apoptosis by Annexin V-FITC Assay

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The apoptotic cells were quantified using an Annexin V-FITC (fluorescein isothiocyanate) (Sigma-Aldrich, St. Louis, MO, USA) cell apoptosis assay kit according to the instruction provided with the kit [25 (link)]. In brief, about 1.5 × 105 cells were plated in 6-well plates and treated with galaxamide and representative compound (0, 2.5, 5, and 10 μg/mL) for 48 h. The cells were resuspended in 200 mL binding buffer. Afterwards, 5 mL Annexin V-FITC was added and then incubated in darkness at room temperature for 10 min. The cells were again resuspended in 200 mL binding buffer and stained with 5 mL PI (propidium iodide). The prepared cells were then analyzed using a flow cytometry (Coulter Epics Elite, Miami, FL, USA). The cells in the FITC-positive and PI-negative fractions were regarded as apoptotic cells.
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6

Cell Cycle Analysis by Flow Cytometry

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After incubation period, cells were collected by the trypsin treatment and fixed with 70% ethanol. The cellular DNA was stained for 30 min with 0.1 mg/ml propidium iodide solution. Finally, the cells were analyzed via flow cytometry (Epics Elite, Coulter, Hialeah, FL, USA).
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7

Flow Cytometric Immunostaining Protocol

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The cells were fixed with 1% paraformaldehyde (Sigma-Aldrich) and stained with appropriate antibodies at room temperature. The samples (at least 10 4 cells each) were analyzed with an Epics Elite flow cytometer (Coulter, Marseille, France) in the logarithmic channel of fluorescence. The data were processed with EXPO32 software (Applied Cytometry Systems, Sheffield, UK). Cells were gated in forward and side scatter to remove cell debris.
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8

Sub-G1 Apoptosis Assessment Protocol

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Sub-G1 analysis was conducted following a well-established lab protocol. Cells were plated overnight before treating with drugs. After the experiment was completed, all floating and adherent cells were harvested. Once cells were harvested, they were gently centrifuged and washed with PBS to remove the phenol red found in the culture medium. Once thoroughly washed, cells were resuspended and fixed in 70% cold ethanol and stored at 4°C overnight. Once cells were fixed, they were stained with propidium-iodide to bind DNA. Cells were then run on an Epics Elite (Beckman Coulter) flow cytometer. FlowJo was used to analyze the percentage of apoptotic cells.
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9

Profiling Dendritic Cell Responses to PCV2 Infection

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Induced DCs from the upper chamber of each transwell were collected and suspended in 250 µL of PBS. DCs stained with the FITC-anti-CD1a antibody and R-PE-anti-SWC3a antibody (Beckman Coulter, Florida, USA) were re-suspended in PBS and analyzed using a flow cytometer (EPICS ELITE; Beckman Coulter, Florida, USA). Cells were stained with the FITC-labeled anti-SLA-DR antibody (AbD Serotec, Kidlington, UK) and the PE-labeled anti-CD80/86 antibody (Ancell, California, USA) for 30 min at room temperature in the dark. The cells were then rinsed with PBS, resuspended in PBS, and then detected by flow cytometry.
CD1a and SWC3a double-positive cells indicated the presence of DCs. Effects of PCV2-infected PIEC on CD80/86 and MHC-II expression on DCs were analyzed. In addition, the data collected from the flow cytometry experiments were used to determine the timing of the subsequent DC endocytosis and antigen presentation assays.
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10

Overexpression of MUC1 in ES-2 Cells

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A human ovarian carcinoma cell line, ES-2, demonstrated the lowest expression level of MUC1 among all cell lines examined previously [24 (link)]; therefore, it was employed to investigate the effect of overexpression of MUC1. MUC1 cDNA encoding full-length MUC1 protein containing 22 or 42 tandem repeats, donated by Dr. O.J. Finn and Dr. M.A. Hollingsworth, respectively [36 (link),37 (link)], were ligated into pCEP4 vectors and stably introduced into ES-2 cells using standard electroporation procedures. After selection with hygromycin B (Calbiochem-Novabiochem Co., San Diego, CA, USA), cells exhibiting the highest levels (top 5%) of mAb MY.1E12 binding were obtained by sorting with an EPICS ELITE (Beckman Coulter Inc., Fullerton, CA, USA). After propagation in culture, cell sorting was conducted two more times. ES-2 cells transfected with cDNA encoding MUC1 protein containing 22 or 42 repeats were designated as ES-2/T-22 cells and ES-2/T-42 cells, respectively [15 (link)].
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