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15 protocols using cx3cl1

1

Differentiation of iHPCs and iPS-microglia

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iHPCs and iPS-microglia were differentiated according to the protocol published by McQuade et al. (McQuade et al., 2018 (link)). To begin iHPC differentiation, iPSCs were passaged in mTeSR-E8 to achieve a density of 80 colonies of 100 cells each per 35mm well. On day 0, cells were transferred to Medium A from the STEMdiff™ Hematopoietic Kit (Stem Cell Technologies). On day 3, flattened endothelial cell colonies were exposed to Medium B and cells remained in medium B for 7 additional days while iHPCs began to lift off the colonies. On day 10, non-adherent CD43+ iHPCs were collected by removing medium and cells with a serological pipette. At this point, d10-d11 iHPCs can be frozen in Bambanker (Wako). Cells used for early-postnatal iHPC transplantation were thawed in iPS-Microglia medium (DMEM/F12, 2X insulin-transferrin-selenite, 2X B27, 0.5X N2, 1X glutamax, 1X non-essential amino acids, 400 μM monothioglycerol, and 5 μg/mL human insulin freshly supplemented with 100ng/mL IL-34, 50ng/mL TGFβ1, and 25 ng/mL M-CSF (Peprotech)) and allowed to recover for 24 hours, then resuspended at 62,500 cells/uL in 1X DPBS (low Ca2+, low Mg2+). Cells utilized for in vitro experiments continued microglial differentiation for 28 days. During the last 3 days in culture, 100ng/mL CD200 (Novoprotein) and 100 ng/mL CX3CL1 (Peprotech) were added to mature microglia in a brain-like environment.
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2

Generating iPSC-derived Microglia

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iPSC-microglia were generated as described in McQuade et al., 2018 (link) and McQuade and Blurton-Jones, 2021 (link). Briefly, iPSCs were directed down a hematopoietic lineage using the STEMdiff Hematopoietic kit (STEMCELL Technologies). After 10–12 days in culture, CD43+ hematopoietic progenitor cells were transferred into a microglia differentiation medium containing DMEM/F12, 2× insulin-transferrin-selenite, 2× B27, 0.5× N2, 1× GlutaMAX, 1× nonessential amino acids, 400  μM monothioglycerol, and 5  μg/mL human insulin. Media was added to cultures every other day and supplemented with 100  ng/mL IL-34, 50  ng/mL TGF-β1, and 25 ng/mL M-CSF (PeproTech) for 28 days. In the final 3 days of differentiation, 100  ng/mL CD200 (Novoprotein) and 100  ng/mL CX3CL1 (PeproTech) were added to culture.
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3

Recombinant Cytokine Immunoassay Protocol

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Recombinant human IFN-γ, CXCL10, CCL3, and CX3CL1 were obtained from Peprotech and CXCL9 from BioLegend. Low endotoxin azide-free blocking antibodies for CXCR3 and IFN-γR and isotype control were obtained from BioLegend.
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4

Isolation and Culture of Primary Astrocytes and Microglia

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Primary astrocytes and microglia were prepared from neonatal (P0-P2) mouse cortex from Cx3cr12+/+ and Cx3cr1-/- and grown and isolated as described in [20] . Briefly, neonatal (P0-P2) mouse cortex were mechanically dissociated and the cells were seeded onto 75 cm2 flasks in DMEM:F12 supplemented with 10% FCS and penicillin/streptomycin. After 2 weeks in culture, flasks were trypsinized and separated using CD11b MicroBeads for magnetic cell sorting (MACS Miltenyi Biotec, Germany). Microglial and astroglial cultures were at least 99% pure, as judged by immunocytochemical criteria. Medium was changed to Dulbecco's Modified Eagle Medium:F12 (DMEM:F12) serum-free without antibiotics 16 h before treatment. Immortalized microglial cell line (IMG) isolated from the brains of adult mice, were purchased from Kerafast Inc., and were grown in Dulbecco's Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum, 1% penicillin/streptomycin and 2 mM L-glutamine, in 5% CO2 at 37 °C, 50% relative humidity. Medium was changed to serum-free DMEM without antibiotics 16 h before treatments. CX3CL1 was obtained from PreproTech (Catalog# 400-26) and solubilized in water at 46 μM and used at 100 nM. Sulforaphane was obtained from LKT Labs (Catalog# S8044) and used at 15 μM for short-time treatment (6 h) or 5 μM for long-time treatment (16 h).
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5

Differentiation of Microglia from hiPSCs

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Details of microglial differentiation from hiPSCs are summarized in Sonn et al., 2022 (link). Briefly, GeneJuice (Sigma–Aldrich, 70,967) and Opti-MEM medium (Gibco™, 31,985,070) were used to establish a doxycycline-inducible PU.1-overexpression clone of hiPSCs. Then, the generation of microglial cells from iPSCs was divided into two stages. First, hematopoietic progenitor cells were generated from hiPSCs (hiHPCs; ∼day 18) in modified StemPro™-34 SFM (1×) (Gibco™, 10,639,011) medium supplied with multiple cytokines and chemicals (BMP4 (PEPROTECH), CHIR99021 (Focus Biomolecules), VEGF (Thermo Fisher Scientific), FGF2 (PEPROTECH), SCF (PEPROTECH), IL-3 (PEPROTECH), IL-6 (PEPROTECH), and IWR-1e (Thermo Fisher Scientific). Doxycycline (1 μg/mL) was added to the medium during days 6 ∼ 18.
Second, microglia-like cells were differentiated from hiHPCs (day 19∼) in modified DMEM/F12 (1:1, Gibco™) supplied with a cocktail of five cytokines (100 ng/mL IL-34, 50 ng/mL TGFβ1, 25 ng/mL M-CSF, 100 ng/mL CD200, and 100 ng/mL CX3CL1, all from PEPROTECH). Induced microglia were used for analysis on day 21.
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6

Directed Differentiation of iPSCs to Microglia

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iPSC-microglia were generated as described (McQuade et al., 2018 (link)). Briefly, iPSCs were directed down a hematopoietic lineage using the STEMdiff Hematopoesis kit (StemCell Technologies). After 10–12 days in culture, CD43+ hematopoteic progenitor cells are transferred into a microglia differentiation medium containing DMEM/F12, 2× insulin-transferrin-selenite, 2× B27, 0.5× N2, 1× glutamax, 1× non-essential amino acids, 400 µM monothioglycerol, and 5 µg/mL human insulin. Media was added to cultures every other day and supplemented with 100 ng/mL IL-34, 50 ng/mL TGF-β1, and 25 ng/mL M-CSF (Peprotech) for 28 days. In the final 3 days of differentiation 100 ng/mL CD200 (Novoprotein) and 100 ng/mL CX3CL1 (Peprotech) were added to culture.
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7

Differentiation of iPSCs to Homeostatic Microglia

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iMGLs were differentiated according to a previously published protocol (55 (link)). Briefly, iPSCs were differentiated to hematopoietic progenitor cells using the STEMdiff Hematopoietic kit for 10 to 15 days before passage into microglia differentiation medium including DMEM/F12, 2× insulin transferrin-selenite, 2× B27, 0.5× N2, 1× glutamax, 1× nonessential amino acids, 400 μM monothioglycerol, and human insulin (5 μg/ml). Cultures were maintained in this basal medium supplemented with interleukin-34 (100 ng/ml), transforming growth factor–β1 (TGF-β1; 50 ng/ml), and macrophage colony-stimulating factor (25 ng/ml) (PeproTech) for 28 days. For the last 3 days in culture, two additional cytokines were added [CD200 (100 ng/ml, Novoprotein) and CX3CL1 (100 ng/ml, PeproTech)] to mature the microglia in a homeostatic brain-like environment.
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8

Differentiation of hiPSCs into Microglia

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WT/WT and ΔE9/ΔE9 hiPSCs were differentiated into MGLs using a previously described protocol (McQuade et al., 2018 (link)). Briefly, hiPSCs were differentiated into hematopoietic progenitor cells (HPCs) using the STEMdiff™ Hematopoietic Kit (#05310, Stem cell Technologies). HPCs were either frozen using Bambanker HRM freezing media (#BBH01; Bulldog Bio) or further differentiated into MGLs. HPCs were cultured in microglia differentiation medium comprised of DMEM/F12 (#11039047; Thermo Fisher Scientific), B27 (#17504-044; Thermo Fisher Scientific), N2 (#17502-048; Thermo Fisher Scientific), insulin-transferrin-selenite (#41400045; Thermo Fisher Scientific), non-essential amino acids (#11140050; Thermo Fisher Scientific), Glutamax (#35050061; Thermo Fisher Scientific), human insulin (#I2643-25 mg; Sigma) and monothioglycerol (#M1753; Sigma) supplemented with 25 ng/ml human M-CSF (#PHC9501; Thermo Fisher Scientific), 50 ng/ml TGF-β1 (#130-108-969; Miltenyl), and 100 ng/ml IL-34 (#200-34; Peprotech). After 24 days in this medium, two additional cytokines, 100 ng/ml CD200 (#C311; NovoProtein), and 100 ng/ml CX3CL1 (#300-31; PeproTech), were added to the medium described above to mature MGLs. MGLs were cultured in this new medium for an additional week and then harvested for experiments.
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9

Nanobody-Mediated GPCR Activation Assay

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HEK293T cells were transiently transfected, using the cell suspension protocol as described above, with only 10 ng of pcDEF3-US28-Rluc or 10 ng of pcDEF3-US28-Rluc and different amounts of pcDEF3-nanobody-mVenus constructs to obtain 1:2, 1:4 or 1:8 ratio. In case of kinetic BRET assays, cells were transfected with a 1:4 US28-Rluc/nanobody-mVenus ratio. After transfection, cells were seeded in a poly-L-lysine (Sigma-Aldrich) coated white 96-well plates (Greiner). Two days-post transfection, medium was aspirated and cells were incubated with a final concentration of 5 μM of Coelenterazine-h (Promega, Madison, Wisconsin, USA) in Hank’s Balanced Salt Solution (HBSS, Sigma Aldrich) supplemented with 0.05% (w/v) Bovine Serum Albumin (BSA, Melford Laboratories Ltd) for 10 min at RT before readout. In case of the kinetic BRET assays, 30 nM CX3CL1 (PeproTech, London, UK) or 100 nM CCL5 (PeproTech) were added right before the readout. Binding was measured using the PHERAstar plate reader (BMG Labtech, Ortenberg, Germany) at 475/30 nm and 535/30 nm.
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10

Generation of Human iPSC-Derived Microglia

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Human iPSC-derived microglia cells were generated from the BIONi010-C human iPSC line (EBiSC), originating from a non-demented, normal male (15–19 years old). Differentiation to human iPSC-derived microglia was essentially as described by Xiang et al.78 (link) Briefly, the protocol was as follows: embryoid body differentiation media for 2 days (consisted of Essential 8TM, 50 ng/ml BMP4, 50 ng/ml VEGF, 20 ng/ml SCF, and 10 µM Y-27632), then myeloid differentiation media for 30 days [consisted of X-VIVOTM 15 medium (Lonza), GlutaMAXTM (Life Technologies), 100 U/ml penicillin/streptomycin (Life Technologies), 50 µM β-mercaptoethanol (Life Technologies), 100 ng/ml MCSF (Peprotech), and 25 ng/ml IL-3 (Cell Guidance Systems)]. These myeloid cells were seeded at a density of 5 × 105 cells/well in six-well plates, followed by microglial differentiation media for 13 days [consisted of: DMEM/F12 HEPES no phenol red, 2% ITS-G (Life Technologies), 1% N2 supplement (Life Technologies), 200 µM monothioglycerol (Sigma), GlutaMAXTM, NEAA (Life Technologies), 5 µg/ml insulin (Sigma), 100 ng/ml IL-34 (Peprotech), 25 ng/ml MCSF and 5 ng/ml TGFβ-1 (Peprotech)] and finally, microglia maturation media for 4 days [consisted of: microglial differentiation media plus 100 ng/ml CD200 (Generon), and 100 ng/ml CX3CL1 (Peprotech)].
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