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6 protocols using cuznsod

1

Urinary Oxidative Stress Biomarkers

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Three biomarkers of oxidative stress were measured from first morning urine samples22 (link). All analyses were conducted using commercial ELISA kits in accordance with manufacturer procedure in Yale Reproductive Ecology Lab by the same researcher (8-OHdG, Enzo Life Sciences, catalogue ADI-EKS-350; Cu-Zn SOD, Enzo Life Sciences, catalog ALX-850-033; TBARS, Cayman Chemical Company, catalogue 10009055).
8-OHdG is a modified nucleotide base and a by-product of repaired DNA damage that is excreted in urine. Levels of 8-OHdG depict the amount of oxidative damage accumulated in cellular DNA through repaired lesions on the guanine base pair caused by ROS. Cu–Zn SOD catalyzes the dismutation of superoxide anion radicals to free oxygen and hydrogen peroxide. Levels of Cu–Zn SOD represent a primary line of enzymatic defense produced in the cytoplasm to neutralize ROS. Levels of TBARS reflect peroxidation of cellular lipids resulting from oxidative stress.
The average inter-assay variability for 8-OHdG, Cu–Zn SOD, and TBARS analysis was 14%, and intra-assay variability was 5%. All results were corrected for urine concentration based on samples’ specific gravity measured with refractometer (model PAL-10S ATAGO, U.S.A., Inc).
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2

Western Blot Analysis of Signaling Proteins

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Total cell lysates and nuclear and cytoplasmic extracts were prepared from sorted and/or treated CD11c+ and CD11c cells as described in text using lysis buffer (Cell signaling) and nuclear extraction kit (Panomics), respectively. Lysates (15 µg) were separated on 10% SDS-PAGE gels and then transferred onto PVDF membranes (Millipore). Nonspecific binding was blocked by incubation in blocking buffer (5% nonfat milk in TBST), followed by sequential incubations with the primary antibody and appropriate horseradish peroxidase-conjugated secondary antibody (Thermo Scientific), each diluted in blocking buffer. Immunoreactive protein was detected using enhanced chemiluminescence (ECL) reagents (Thermo Scientific). Antibodies against κBα (Santa Cruz biotech), phospho-IκBα, NF-κB subunit p65, c-rel, LSD1 (Cell Signaling), phospho IKKα/β, IKKα/β (Cell Signaling), MnSOD (EMD Millipore), Cu-ZnSOD (Enzo lifesciences) and β-actin (Cell signaling) were used for western blot analysis. Densitometric analysis was performed using the ImageJ software.
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3

Protein Expression Analysis via Western Blot

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Western blot analysis was performed as previously described (Bhaskaran et al., 2018). Protein bands were detected by ECL reagent using G‐Box (Syngene), and the band intensity was measured by NIH image J. The following primary antibodies were used: CuZnSOD (Enzo), β‐actin (Sigma) VDAC (Cell Signaling), MURF1 (Santa Cruz).
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4

Quantifying CuZnSOD and GAPDH Proteins

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Equal amounts of protein from brain, spinal cord, gastrocnemius and quadriceps muscle were resolved by SDS-PAGE and transferred to PVDF membrane. The membranes were blocked and probed with CuZnSOD (Enzo Life Sciences, Inc., Farmingdale, NY, USA) and GAPDH (Sigma, St. Louis, MO, USA) antibodies overnight at 4 °C. Membranes were washed extensively and incubated with secondary antibodies linked to horseradish peroxidase (Santa Cruz Biotechnology, Dallas, TX, USA). Proteins were visualized using enhanced chemiluminescence reagent and signal intensities were quantified using ImageJ 1.45b software (developed by Wayne Rasband, National Institute of Health, Bethesda, MD).
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5

Western Blot Analysis of Muscle Proteins

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Muscles were ground in a mortar and pestle under liquid nitrogen, and frozen muscle powder was placed into Radioimmunoprecipitation assay (RIPA) buffer containing 50 mM Tris (pH 7.4), 150 mM NaCl, and protease inhibitors. Samples were homogenized on ice and centrifuged at 10 000 g for 10 min at 4°C. Protein content of samples was determined using the bicinchoninic acid method (Sigma‐Aldrich, Poole, UK). For assessment of specific proteins in muscle, 20 mg of total protein was applied to a 4–20% mini‐PROTEAN TGX precast gel with a 4% stacking gel (Bio‐Rad Laboratories Ltd, Hemel Hempstead, UK). The separated proteins were transferred onto nitrocellulose membranes by western blotting. Membranes were probed using antibodies against calstabin, serca1, calsequestrin (Abcam, Cambridge, UK), DHPR, RYR (Thermo Scientific, USA), calcineurin, nuclear factor of activated T‐cells (NFAT), calpain (Cell Signaling, Hitchin, UK), and CuZnSod (Enzo, Farmingdale, NY, USA). Horseradish peroxidase conjugated anti‐rabbit IgG or anti‐mouse IgG (Cell Signaling) was used as secondary antibody. Peroxidase activity was detected using an ECL Plus substrate (Amersham International Cardiff, UK), and band intensities were analysed using Quantity One Software (Bio‐Rad Laboratories Ltd). All protein contents were normalized to protein levels determined by the ponceau stain.
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6

Antibody Validation for RCAN1 and Signaling

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The "common" RCAN1 antibody directed against invariant exon7 of RCAN1 which recognizes all isoforms of RCAN1, was generously provided by Prof. Kelvin J.A.
Davies (USC, Los Angles, USA) . Calcineurin, adiponectin and catalase antibodies were purchased from sigma Aldrich (Saint-Louis, USA). PGC1-Į antibody was purchased from cell signaling (Danvers, USA). All NFAT antibodies were purchased from Abcam (Cambridge, UK). CuZnSOD, MnSOD and GPx antibodies were purchased from Enzo Life Science (Farmingdale, USA). All of these antibodies were diluted in skimmed milk or BSA solution in the ratio recommended by their producers.
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