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12 protocols using matrix glue

1

Transwell Assay for Cell Migration and Invasion

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Transwell chambers (pore size 8 μm; cat no. TCS013024, Guangzhou Jet Bio-Filtration Co., Ltd., Guangzhou, China) were used to evaluate cell migration and invasion. For cell invasion assay, Transwell chambers were previously coated with matrix glue (cat no. 356234, Becton, Dickinson and Company), and then the Transwell chambers coated with matrix glue were put in the pre-cooled 24-well plate for use. The cells with different treatments were collected, and resuspended with serum-free medium at a final density of 5 × 105. The cells were inoculated to the upper insert of Transwell chambers, and the lower chamber of Transwell chambers was the complete medium. After 48 h of incubation, the cells were fixed with 4% paraformaldehyde for 20 min. After washing with PBS three times, the cells were stained with crystal violet (cat no. C0121, Beyotime Biotechnology) at room temperature for 20 min. After washing and removing the excess dye, the stained cells were observed under a microscope at a magnification of 100 × .
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2

RNA Extraction and qRT-PCR Analysis

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The RNA extraction and one-step reverse transcription quantitative real-time PCR (qRT-PCR) kits were purchased from Dayroot Biochemical Technology (Beijing, China); the Dulbecco’s Modified Eagle Medium (DMEM) culture medium and fetal bovine serum (FBS) were purchased from the Gibco Company (New York, USA); the matrix glue was purchased from the Becton Dickinson (BD) Company (New York, USA); the Transwell Lab was purchased from the Corning Company (USA); and the β-Actin, E-cadherin, N-cadherin, MMP2, MMP9, BCL2L1, P53, BAX, Caspase 3, and Caspase 7 antibodies were purchased from Proteintech (Chicago, USA).
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3

Angiogenesis Assay with Matrix Glue

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Fifty microliters of matrix glue (356234, Becton, Dickinson and Company, USA) was added to a 6-well plate, which was then incubated for 30 min. After transfection for 24 h, SW-620 and LOVO cells were collected and resuspended in 2 ml medium. Then, 50 μl cells were added to the pre-coagulated matrix glue for further culture in the incubator. After 12 h, the culture plate was photographed under an inverted microscope (POMEAS, China), and Image J (1.8.0, National Institutes of Health, Germany) was used to calculate the length of the tubule.
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4

Cell Migration and Invasion Assay

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OS cells in the logarithmic growth phase were digested with trypsin and washed with phosphate-buffered saline (PBS) and serum-free medium. Transwell chambers were placed on a 24-well plate, and 1×105 cells and serum-free medium were inoculated in the upper compartment of each well. DMEM containing 10% FBS was added to the lower compartment. For cell invasion assay, 50 μL of diluted matrix glue (BD Biosciences, Franklin Lakes, NJ) was added to the upper chamber, followed by incubation at 37°C for 4–5 h. The cells were cultured in a 37°C incubator for 22 h in the migration experiment and 24 h in the invasion experiment. The cells that migrated or invaded were fixed, stained, and counted at a specified time. PBS, trypsin, and serum-free medium were purchased from Thermo Fisher Scientific.
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5

Organoid Culture for Colorectal Cancer Research

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Organoid culture is a 3D culture model. In contrast to 2D culture, a matrix gel is used as a 3D culture scaffold to maintain the 3D structure. The culture plate is of a low-adsorption type, and the 3D culture is more closely related to the in vivo environment in comparison with the 2D culture, particularly concerning cell-cell interactions. In the present study, organoid culture was performed based on the descriptions of a previous study (16 (link)). The HT29 and SW480 cells were digested into single cells and transfected with pcDNA3.1-CHL1 (pcDNA3.1-RELA) or the control vector for 2 h, Subsequently, the cells were resuspended with CRC organoid culture medium (Orgen Biotech) and resuspended 1:1 with matrix glue (BD Biosciences). Following coagulation, the organoid culture medium was added to 48-well plates (Biofil) and placed in a cell incubator of 5% CO2 at 37˚C to observe the growth of organoids daily.
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6

Transwell Assay for Cell Invasiveness

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The invasiveness of cells was evaluated using the transwell assay (BD Biosciences, Bedford, MA, USA). The matrix glue (BD Biosciences) was diluted 6:1 in serum-free medium, evenly spread on the membrane in the upper layer of the transwell and placed in the incubator at 37 °C for 2 h to solidify. The cells were then diluted in a serum-free culture medium, added to the lower transwell chamber (200 μL of cell suspension; 8 × 104 cells) along with 600 μL of culture medium with 10 % FBS, and incubated for 24 h. The cells were then fixed with 4 % paraformaldehyde (20 min), washed with PBS, and stained with a crystal violet solution for 15 min. Subsequently, the upper layer cells were air-dried and imaged in an inverted fluorescence microscope. The Image J software was used to analyze and quantify cell invasiveness, with cells stained with crystal violet defined as positive. The average number of stained cells in six random fields, in each compartment, was calculated.
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7

Cell Migration Assay Protocol

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A density of 2×104 cells per well in 200 μL of serum-free medium was used to seed the cells in the upper chamber of a transwell plate. The upper chamber was either coated or uncoated with matrix glue (BD Biosciences, USA). The lower compartment was loaded with 700 μL of complete medium supplemented with 10% serum. After 36 hours of incubation, the cells were fixed, stained, and counted by microscopy. Images were captured for analysis.
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8

Transwell Assay for Cell Migration and Invasion

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Transwell chambers were placed on a 24-well plate, and osteosarcoma cells in the logarithmic growth phase were digested with trypsin and washed with PBS and serum-free medium. 1∗105 cells and serum-free medium were inoculated in the upper compartment of each well. DMEM medium containing 10% fetal bovine serum was added to the lower compartment. For cell invasion assay, 50 μl diluted matrix glue (BD Biosciences, Franklin Lakes, NJ) was added to the upper chamber and incubated at 37°C for 4-5 hours; the following operation is the same as above. The cells were cultured in a 37°C incubator for 22 hours in the migration experiment and 24 hours in the invasion experiment. The cells that have migrated or invaded are fixed, stained, and counted at a specified time.
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9

Transwell Invasion Assay Protocol

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The invasive ability of the cells was evaluated by transwell assay. The cells were inoculated into the upper chamber coated with matrix glue (BD Biosciences, CA, United States), and the medium with and without 10%FBS was added to the lower and upper wells, respectively, and cultured at 37 °C for 24 h. After wiping the stroma and cells of the upper chamber that did not pass through the membrane surface, the cells were immobilized and stained with crystal violet. The invasion of cells was observed under a microscope.
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10

Transwell Migration and Invasion Assay

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Transwell experiments were divided into transwell migration and transwell invasion experiments. The basic operations were as follows: transwell cells were placed into a 24-well culture plate, the chamber is referred to herein as the superior chamber and the culture plate is referred to as the lower compartment. The cells were then digested in a serum-free medium, following which the cell density was adjusted to 1 × 106 cells/mL and the sample was inoculated in the upper chamber. Dulbecco's Modified Eagle Medium (DMEM) containing 10% FBS was then added to the lower chamber. Transwell invasion assays were performed by precoating the upper membrane with 40 µL of matrix glue (BD Biosciences, USA); the cells were fixed with 4% paraformaldehyde and were washed with phosphate buffer solution (PBS) after 24 h. Then, they were stained with 0.1% crystal violet (Solarbio, China) and representative images were observed at × 100 and × 200 magnification with an optical microscope (Olympus, Tokyo, Japan). Five non-repeating fields per chamber were selected for photography and counted.
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