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Standard dt15 oligonucleotide

Manufactured by Evrogen

The Standard dT15 oligonucleotide is a synthetic DNA sequence composed of 15 thymine nucleotides. This product is commonly used as a primer or a hybridization probe in various molecular biology applications.

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2 protocols using standard dt15 oligonucleotide

1

Quantifying Gene Expression by RT-qPCR

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Gene expression level was determined by reverse transcription and real-time PCR. Total RNA was isolated from renal tissue samples with ExtractRNA reagent (Evrogen, Russia). RNA quality was estimated electrophoretically in 2% agarose gel. RNA concentration was determined using NanoDrop 1000 c spectrophotometer (USA). Two micrograms of total RNA was used per reverse transcription reaction with MMLV reverse transcriptase and standard dT15 oligonucleotide (Evrogen, Moscow, Russia). The synthesized cDNA was used for real-time PCR with 200 nm gene-specific primers (Table 1). Real-time PCR was carried out using DNA amplifier DTlite (DNA-Technology, Moscow, Russia) with qPCRmix-HS SYBR kit (Evrogen, Moscow, Russia). The PCR cycling mode was as follows: (1) «hot-start»: 95 °C, 5 min; (2) denaturation, 95 °C, 15 s; (3) primer annealing and DNA synthesis at 60 °C, 30 s. Stages (2) and (3) were repeated 40 times. The threshold cycle (Ct) value was determined using DTmaster software (DNA-technology, Moscow, Russia). The signal was normalized to that obtained for the gene of β-Actin (Actb). ∆Ct value was calculated by the formula ∆Ct = Ct (gene of interest) – Ct (Actb); ∆∆Ct was calculated ∆Ct (control) − ∆Ct (experiment). The 2^-∆∆Ct method was used to calculate differences in genes expression [48 (link)].
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2

Quantitative real-time PCR protocol

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Two micrograms of total RNA was used per reverse transcription reaction with MMLV reverse transcriptase and standard dT15 oligonucleotide (Evrogen, Russia) following the manufacturer's protocol.
The obtained cDNA was used for real-time PCR with gene-specific primers (Table 1) and qPCRmix-HS SYBR kit (Evrogen, Russia). Real-time PCR was carried out using DNA amplifier CFX96 (Bio-Rad, USA). The PCR cycling regime was as follows: (1) "hot-start" 95 °C, 5 min; (2) denaturation 95 °C, 15 s; and (3) primer annealing and DNA synthesis at 60°C, 30 s. Stages (2) and (3) were repeated 40 times. The threshold cycle (Ct) value was determined using Bio-Rad software. The gene expression data were normalized to the housekeeping gene of cytoskeletal betaactin (Actb). The change in gene expression was calculated using the 2-ΔΔCt method (Schmittgen TD, Livak KJ. 2008) (link)
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