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5 protocols using rotation microtome

1

Immunohistochemical Analysis of Mouse Eyeball

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Mouse eyeballs were enucleated and immediately fixed in 4% paraformaldehyde at 4°C overnight as previously described (Fu et al., 2018b (link)). After rinsed three times with PBS, the eyes were dehydrated and embedded in paraffin (Paraplast, Sigma-Aldrich, USA). Tissue slices (5 μm) were obtained using a rotation microtome (Thermo Fisher, USA), deparaffinized, and then rehydrated with graded ethanol for 5 min twice each. Antigen retrieval was conducted in citrate buffer. Once cooled, tissue sections were blocked with 10% goat serum and 0.2% Triton-X 100 in a dark and humid chamber for 2 h. After rinse briefly with PBS, the sections were immunolabeled with rabbit polyclonal antibody (α-smooth muscle actin, 1:100, Abcam) and incubated at 4°C overnight. After flushing, the samples were incubated with corresponding secondary antibodies (Alexa goat anti-rabbit 568, 1:500, Thermo Fisher) for 2 h. DAPI (Vector, CA) was used to visualize cellular nuclear. The slices were examined by the Keyence all-in-one fluorescence microscope (Itasca, USA) (Kasetti et al., 2016 (link)). For H&E staining, the paraffin section of mice TM tissues were sequentially deparaffinized, rehydrated, stained with hematoxylin and eosin (Sigma-Aldrich), dehydrated and sealed. The slices were visualized and photographed with phase contrast microscope (DMI 1, Leica).
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2

Histological Analysis of Spinal Degeneration

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The lumbar spines at the L5–6 level were harvested after euthanasia 4 weeks after surgery. After a midline skin incision and detachment of the paravertebral muscles, the exposed vertebrae were separated from the soft tissues. We identified the L5 and L6 vertebrae and separated them from the vertebral column using a rongeur.
The specimens were fixed with 4% paraformaldehyde (pH 7.2, room temperature) for 48 h and decalcified using a decalcifying solution with ethylenediaminetetraacetic acid (Sigma-Aldrich, Missouri, USA) for 2 weeks, followed by embedding in paraffin. The tissues were cross-sectioned transversely (in axial plane) into 4-µm thick sections using a rotation microtome (Thermo Fisher Scientific, Massachusetts, USA) and stained with Masson’s trichrome stain (Masson’s trichrome stain kit, Polysciences, Inc., Warrington, USA) according to the manufacturer’s protocol to evaluate the mineralized bone matrix and osteoid.28 (link)
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3

Subcutaneous Tumor Xenograft Model

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Approximately 5 × 106 H1975-GFP cells were harvested, resuspended in 100 μl PBS, and injected subcutaneously into each mouse's right flank. Treatment was commenced when the tumor size reached approximately 100 mm3. The size of the tumor and the weight of the mice were recorded every day. An animal in vivo imaging system was used to evaluate the tumor's size on Days 7 and 14 after radiotherapy. Tumor volume (V) was calculated according to the formula: π/6 × length × width2.
The tissues from the tumor-bearing mice were fixed in 4% PFA at 4 °C overnight and embedded into paraffin (Paraplast, Sigma-Aldrich) using a tissue processor (Thermo Fisher Scientific, Loughborough, UK). Paraffin sections (5 µm) were cut with a rotation microtome (Thermo Fisher Scientific, Bremen, Germany). The images were collected by Versa 8 (Leica, Germany). The integrated optical density of IHC sections was calculated by Image-Pro Plus 6.0.
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4

Decalcification, Paraffin Embedding, and Masson Staining

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The fixed femurs were decalcified by decalcifying solution with EDTA (Sigma-Aldrich, Missouri, USA). Then, the samples were embedded in paraffin. Four-micrometer sections were prepared by a rotation microtome (Thermo, Massachusetts, USA). Bone sections were labeled with Masson staining according to the manufacturer’s protocol (Sigma-Aldrich, Missouri, USA).
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5

Decalcification and Histological Staining

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The fixed femurs were decalcified by decalcifying solution with EDTA (Beyotime Biotechnology, Shanghai, China). After dehydration, the samples were embedded in paraffin, and 4 μm sections were prepared on a rotation microtome (Thermo, Massachusetts, USA). Bone sections were Masson stained following the manufacturer’s protocol (Sigma-Aldrich, Missouri, USA).
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