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3 protocols using ab87433

1

Western Blot Analysis of Protein Complexes

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Protein concentration was measured using the Protein Assay Dye Reagent Concentrate (Bio-Rad). Protein lysates were separated on 10% SDS-PAGE gels, transferred onto nitrocellulose membrane (Amersham) and blocked for 1 h in 5% BSA–TBS. After incubation with primary antibodies (overnight) and secondary antibodies (1h, RT), the membranes were washed and analyzed using the LI-COR Odyssey Infra-red Imaging System. Immunoreactivity bands were with Image J software or by the software included in the Odyssey Infra-red Imaging System. Primary antibodies used in western blotting with dilutions were as follows: monoclonal Anti-FLAG M2 antibody (Sigma Aldrich, F1804, 1:2000), PRPF8 (Abcam, ab87433; 1:300), EFTUD2 (Abcam, ab72456, 1:200), ZNHIT2 (Abcam, ab126133; 1:500), RUVBL1 (Cell signaling #12300; 1:500), RUVBL2 (Cell signaling #8959; 1:500), PIH1D1 (Invitrogen #PA5-61482, 1:1000), RPAP3 (Invitrogen #PA5-58334D; 1:500). Secondary antibodies used were as follows: Anti-Rabbit IgG (H + L) (DyLightTM 680 Conjugate) (Cell signaling #5366; 1:15000) and Anti-Mouse IgG (H + L) (DyLightTM 800 4X PEG Conjugate) (Cell signaling #5257; 1:15000). Conjugated antibodies used were StrepMAB-Classic HPR (IBA Lifesciences #2-1509-001; 1:30000) and Anti-polyHistidine-Peroxidase (Sigma Aldrich #A7058; 1:1000).
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2

Western Blot Analysis of Spliceosomal Complexes

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Twenty micrograms of lysates or total eluates obtained from CoIP or GST pulldown experiments were separated by SDS–PAGE and transferred electrophoretically to Immobilon-P membranes (Millipore). Membranes were blocked in 5% nonfat dry milk in PBS-Tween (0.1% Tween20 (Sigma-Aldrich)) and incubated with anti-EFTUD2 (1:10,000, Abcam; ab72456), anti-PRPF8 (1:5,000, Abcam; ab87433), anti-SNRNP200 (1:2,000, Abcam; ab118713), anti-CD2BP2 (1:2,000, Abcam; ab136141), anti-PRPF6 (1:5,000, Abcam; ab99292), anti-DDX23 (1:2,000, Abcam; ab70461), anti-SNRNP40 (1:2,000, Abcam; ab155592), anti-AAR2 (1:2,000, Abcam; ab150727), anti-RUVBL2 (1:2,000, Abcam; ab36569), anti-TSC1 (1:2,000; Thermo Scientific; 37-0400), anti-TSC2 (1:2,000, Santa Cruz; SC-893), anti-GST (1:5,000, Abcam; ab9085), anti-6 × His (1:5,000, Abcam; ab18184), anti-Myc (1:5,000, Santa Cruz; SC-40) and anti-FLAG M2 (1:5,000, Sigma-Aldrich; F1804). Protein bands were visualized using anti-rabbit and anti-mouse IgG secondary antibodies linked to horseradish peroxidase (1:2,500, GE Healthcare; NA934V and NA931V) and ECL prime (GE Healthcare). See Supplementary Figs 3 and 4 for uncropped versions of each blot.
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3

Antibodies for Protein Analysis

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Antibodies used in this study were anti-α-tubulin (DM1A, Sigma-Aldrich), anti-Caspase-7 (C7, Cell Signaling), anti-Caspase-3 (8G10, Cell Signaling), anti-GFP (clone B-2, Santa Cruz and ab1218, Abcam), hnRNP I (sc-133667, Santa Cruz), anti-PRPF6 (sc-48786, Santa Cruz), anti-PRPF8 (ab87433, Abcam), anti-TAP (PAP) (Sigma-Aldrich), anti-hSnu66 (A301–423A, Bethyl), anti-SC35 (for immunofluorescence: ab11826, Abcam; for immunoblotting: #556363, BD Biosciences), anti-Son (HPA023535, Sigma-Aldrich), anti-2,2,7-trimethylguanosine (K121, Calbiochem), anti-U1A (ab55751, Abcam), anti-U2AF65 (ab37483, Abcam), anti-Sm antigen Y12 (ab3138, Abcam). For immunofluorescence Alexa Fluor 488- and Alexa Fluor 555-labeled secondary goat anti-mouse and donkey anti-rabbit/anti-mouse antibodies from Invitrogen were used. Hub1-specific antibodies against recombinant S. cerevisiae Hub1 and human Hub1, respectively, were affinity-purified from serum of immunized rabbits.
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