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7 protocols using k2hpo4 kh2po4

1

Cultivation of C. elegans Strains

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The C. elegans strains were maintained and cultured on nematode growth medium (NGM; 3 g/L NaCl [Sigma-Aldrich, S7653], 2.5 g/L peptone [Thermo Fisher Scientific, 211677], 17 g/L agar [Sigma-Aldrich, A6686], 25 mM K2HPO4/KH2PO4 [Sigma-Aldrich, P3786, P0662; pH 6.0], 1 mM CaCl2 [Sigma-Aldrich, C1016], 1 mM MgSO4 [Sigma-Aldrich, M7506], 5 mg/L cholesterol [Sigma-Aldrich, C8667]) plates seeded with OP50 E. coli using standard techniques [65 (link)] at 20°C, with the exception of temperature-sensitive daf-2(e1370) mutants, which were grown at 16°C. All the strains used in this study are listed in Table S2.
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2

Respiration Inhibitor Evaluation in M. smegmatis

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M. smegmatis (ATCC 19420) cultures
were grown using 7H9 media (produced as suggested
by the manufacturer, Sigma-Aldrich) using a 1:100 inoculation every
3–4 days. Cells were incubated at 37 °C, 170 rpm. Cells
were prepared for the assay by harvesting after 72 h growth and centrifuging
at 5000g for 15 min at 4 °C (JLA 16.250 rotor,
Beckman Avanti J-25 Centrifuge). Centrifuged cells were washed with
filtered potassium phosphate (KPi) buffer (K2HPO4 + KH2PO4, Sigma-Aldrich) and then concentrated
to an OD600 = 3 by centrifugation and resuspension in fresh
7H9. Cells were stored at −20 °C until required. 1 mL
(CFU mL–1 = 7.5 × 106) assays were
conducted using a Hansatech Oxytherm+ oxygen electrode at 37 °C,
100% stirring. The 100% oxygen consumption rate was found for each
assay using the rate achieved after the addition of 10 mM glucose.
Once a steady oxygen rate was achieved, ETC inhibitors were sequentially
added every 3 min to achieve these ranges: CK-2-63 (20–200
μM), BDQ (1–56 nM), and Q203 (10–110 nM). Combinations
were assessed using the same ranges with the addition of CK-2-63 (3.5
μM) that was administered at the same time as the first drug
addition. Rates were recorded from 2 min after each drug addition
for 1 min. The results were analyzed using Hansatech Oxytrace software.
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3

Reactivating and Inoculating L. monocytogenes

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The standard strain of L. monocytogenes PTCC 1,163 was obtained from the Razi Vaccine and Serum Research Institute (Persian Type Culture Collection (PTCC), Tehran, Iran). The strain was then reactivated in glycerol stock containing 20% (w/v) glycerol in Brain Heart Infusion (BHI) broth (Scharlua, Spain) and stored at −20°C. Subsequently, the isolated strain was inoculated into vials containing 15 ml BHI and incubated at 37°C at 150 rpm for 24 hr, with two consecutive transfers (Ojagh et al., 2010). The output was then centrifuged three times at 6,000 rpm for 5 min to separate bacterial cells from BHI. After twice centrifuging, the supernatant was removed, followed by twice washing, resuspended in PBS (50 mM K2HPO4/KH2PO4; pH 7.4; Sigma‐Aldrich, St. Louis, USA) to obtain standard cell suspensions. For bacteria counting, the optical density (OD) method at 600 nm (OD600) was used by a spectrophotometer UV‐1204 (Shimadzu, Kyoto, Japan) (according to the pretest, 0.1–0.08 OD was equal to 1 × 108 cfu/g). After preparing serial dilution, the raw fish fillets were inoculated by 1 × 105 cfu/g of L. monocytogenes (de Sousa Guedes & de Souza, 2018).
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4

Electrochemical Analysis of Sodium Diclofenac

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2-[(2,6-dichlorophenyl)amino]benzeneacetic acid sodium salt (DF, Sigma-Aldrich, Saint Louis, USA) was dissolved in deionized water to prepare a 0.01 mol L−1 stock solution of DF. This solution was diluted as required in individual experiments using deionized water. The effects of the type and the pH of the supporting electrolyte on the DF signal were examined using 0.1 mol L−1 solutions of H2SO4, CH3COOH, CH3COONa + CH3COOH (NaAc–HAc) with pH values of 3.5 ± 0.1, 4.0 ± 0.1, 4.2 ± 0.1, 4.5 ± 0.1, 5.0 ± 0.1 and 5.6 ± 0.1, K2HPO4 + KH2PO4 with a pH value of 7.0 ± 0.1, (NH4)2SO4 + NH4OH with a pH value of 8.3 ± 0.1, NH4Cl + NH4OH with a pH value of 10.0 ± 0.1, and NaOH with a pH value of 13.0 ± 0.1 prepared from Sigma-Aldrich reagents. Interferences were tested with the use of standard solutions of Ni2+, Fe3+, Zn2+, Pb2+, Sb3+, Cu2+, Cd2+, V5+, and Mo6+ (Merck). The influences of organic substances were investigated based on a reagent obtained from Sigma-Aldrich (ibuprofen, caffeine, paracetamol, and humic acid) and Fluka (Triton X-100, sodium dodecyl sulphate (SDS), and cetyltrimethylamonnium bromide (CTAB)). HPLC-grade acetonitrile and trifluoroacetic acids (TFA) were purchased from Merck (Darmstadt, Germany). The solutions were prepared using ultrapurified water (>18 MΩ cm, Milli-Q system, Millipore, UK).
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5

Microbial Auto-Aggregation Quantification

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The auto-aggregation assay was performed following the protocol described by Rastogi, Mittal & Singh (2020) (link) with some modifications. L. paracasei_6714, L. fermentum_6702 and L. casei ATCC 393 (control) were grown in MRS broth at 35 ± 2 °C for 24 h and were later harvested through centrifugation (10.000×g for 15 min, 4 °C), washed twice with phosphate buffer solution (PBS) (50 mM KH2PO4/K2HPO4, pH 6.8) (Sigma-Aldrich, San Luis, Missouri, USA) and resuspended in PBS to obtain an absorbance of around 0.8 at 600 nm. three mL of bacterial suspension was vortexed and incubated at room temperature for 4 h. Every hour, 0.1 mL of upper suspension was transferred to 3.9 mL of PBS and the OD600 was measured. PBS was used as blank.
The auto-aggregation percentage was then calculated using the equation: AoAtAo100=%CellularAutoaggregation
where At is the OD600 at time t (t = 1, 2, 3, 4) and Ao is the OD600 at t = 0.
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6

Synthesis and Characterization of Iron Complexes

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All reagents were of analytical grade and used without any prior purification. Griess reagent, glutathione (GSH), iron chloride (II) (FeCl2·xH2O), 1,4,8,11-tetraazacyclotetradecane (cyclam), deferoxamine (N-[5-[[4-[5-[acetyl(hydroxy)amino]pentylamino]-4-oxobutanoyl]-hydroxyamino]pentyl]-N′-(5-aminopentyl)-N′-hydroxybutanediamide, ammonium hexafluorophosphate (NH4PF6), horse skeletal myoglobin, monobasic and dibasic potassium phosphate salts (KH2PO4, K2HPO4) were purchased from Sigma-Aldrich. The spin trap 2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide potassium salt (cPTIO), diethylenetriaminepentaacetic acid (DTPA), N-[4-[1-(3-aminopropyl)-2-hydroxy-2-nitrosohydrazino]butyl]-1,3-propanediamine (SPER/NO, Spermine NONOate), and Angeli's salt (AS, Na2N2O3) were obtained from Santa Cruz Biotechnology.
The complexes trans-[Fe(cyclam)Cl2](PF6) (3), cis-[Fe(cyclam)Cl2]Cl (4) and 1 were prepared as described in the literature [67 (link),69 (link)].
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7

Electrochemical CO2 Reduction Protocol

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The electrochemical measurements were controlled with EC-Lab SP-200 Potentiostat. Resistance between reference electrode and working electrode was measured with Potential Electrochemical Impedance Spectroscopy (PEIS). 50% of the resistance was corrected by the software and the rest was manually corrected. CO2 electrolysis was carried out in a custom-made two-compartment cell, in which the working electrode was separated from the counter electrode by Nafion membrane to hinder the re-oxidation of the products on the counter electrode. The glassware was cleaned in nochromix mixed sulfuric acid bath and afterwards in concentrated HNO3 for 1 h, respectively, rinsed and sonicated with 80 °C ultrapure water several times, and dried at 60 °C in an oven. Each compartment of the cell was filled with 40 mL CO2 (Air liquid 4.5, flow from button, rate: 30 mL min−1) purged electrolyte. A Pt mesh 100 (Sigma-Aldrich 99.9%) was used as counter electrode (CE) and a leak-free Ag/AgCl electrode (Hugo Sachs Elektronik Harvard apparatus GmbH) was used as the reference electrode. The CO2 free measurements were carried out in N2-saturated 0.1 M KH2PO4/K2HPO4 (Sigma-Aldrich, pH of 6.9), while the CO2 electrolysis in presence of CO2 was done in 0.1 M KHCO3 (Sigma-Aldrich, pH of 6.8).
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