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Size marker

Manufactured by Thermo Fisher Scientific

Size Marker is a laboratory product used to determine the molecular weight or size of biomolecules, such as proteins or nucleic acids, during electrophoresis experiments. It provides a reference scale to estimate the size of the sample molecules by comparison.

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2 protocols using size marker

1

Singleplex PCR for Parasitic Infections

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In a volume of 50 μL, the master mix (containing 10× PCR Buffer “20 mM (NH4)2 SO4, 75 mM Tris-HCl (pH. 8.8)”, 0.2 mM dNTP mix, 1 mM MgCl2, 1μl DNA template,1 unit/μl Taq DNA polymerase,20 pmol/μl of each primer sense & antisense, x ddH2O) was prepared for the singleplex PCR amplification reactions. Under DNase and RNase free condition after 5 min at 94 °C, 35 amplification cycles consisting of 1 min at 94 °C, 1.5 min at 55 °C, and 2 min at 72 °C for each parasite were performed separately.
For the visualizing of PCR products, 15 μL of samples was mixed with 5 μL of DNA loading buffer, and in parallel of 100bp Plus (Fermentas) Size Marker were electrophoresed. The expected band weights for E. histolytica, G. intestinalis, and Cryptosporidium spp. were 605, 463, and 240 bp, respectively.
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2

Genomic DNA Extraction and PCR Amplification

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A Qiagen DNeasy Plant Mini Kit was utilized to express genomic DNA from 0.1-0.2 g powdered root tissue. The spectrophotometer Shimadzu UV-mini 1240 was used to assess and calculate the quantity and quality of DNA. A commercial set of 10 random 10-mer primers was obtained (Thermo Scientific). PCR amplifications were carried out in a 25 μL reaction mixture with 10 ng of template DNA, 1X Taq polymerase buffer and 1 U of Taq polymerase, and 2.5 mM MgCl2, 1 μM dNTP, 1 mM primer. Amplifications were done in a TC-3000 Thermal Cycler. The cycle programmed was made up of a preliminary denaturation step at 94°C for 5 min, followed by 40 cycles of 94°C for 1 min, 30°C for 1 min, 72°C for 1 min, and a final elongation at 72°C for 5 min. The PCR products were kept on a 1 % agarose gel with ethidium bromide (0.5 μg/mL) and all digital photographs were taken by the UVP GelDoc-It 310 Imaging System. A 1 kb DNA ladder was used as size marker (Fermentas). 10-mer oligonucleotide primers of 60-70% GC content were benefitted from during the monitoring C. sativus genome for the modification. A negative control with no DNA template was also performed in each PCR amplification to validate the absence of any contamination.
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