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6 protocols using phalloidin 555

1

Embryo Fixation and Cryosectioning

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Embryos were fixed at 4 °C overnight in 4% paraformaldehyde (PFA) in filter-sterilized seawater. After fixation embryos were transitioned into 15% and 30% sucrose and embedded in Tissue Freezing Medium and stored at − 80 °C. Embryos were cryosectioned in 12-μm sections, stained with Sytox-Green 1:1000 and Phalloidin 555 1:300 in PBS overnight (Molecular Probes). TUNEL stained tissue was processed after sectioning using the Click-iT TUNEL Alexa Fluor 488 kit according to the manufacturer’s instructions (Invitrogen). Embryos were mounted in VECTASHIELD Hardset antifade mounting medium and imaged on a Zeiss 880 confocal.
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2

Immunofluorescence Imaging of Bacterial Infection

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After bacterial infection, cells were washed with PBS and fixed in 3.7% paraformaldehyde for 10 minutes at room temperature. Cells were then washed three times with PBS and subsequently blocked with 5% BSA in PBS-T (containing 0.1% Triton X-100; Sigma-Aldrich, St. Louis, MO). For observation, cells were stained with 5 μg/mL phalloidin-555 (Molecular Probes, CA) and 1 μg/mL DAPI (Molecular Probes, CA). Alternatively, the BSA-blocked cells were stained with a mouse anti-αvβ3 primary antibody (1:100; ab7166, Abcam, Cambridge, UK) and a rabbit anti-Salmonella antibody (1:100; ab35156, Abcam, Cambridge, UK) overnight at 4°C. After washing three times with PBS-T, cells were incubated with anti-mouse IgG coupled to Alexa Fluor 555 (1:500; Molecular Probes) and anti-rabbit IgG coupled to Alexa 488 (1:500; Molecular Probes) for 2 h at room temperature. Stained cells were subsequently washed with PBS, mounted on glass slides, and analyzed under an FV1000D confocal laser scanning microscope (Olympus, Tokyo, Japan). For binding analysis, a composite image of 20 sections with a 0.5 μm shift in the z-axis was taken and combined using FV10-ASW 2.0 viewer. The number of adherent bacteria was determined by counting at least 100 high power fields (320 μm × 240 μm). Calculation of exact cell numbers was based on the measured areas and the overall size of the cover slip.
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3

Embryo Cryosectioning and Fluorescent Staining

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Embryos were fixed at 4 degrees Celsius overnight in 4% PFA in filter-sterilized seawater. After fixation embryos were transitioned into 15% and 30% sucrose and embedded in TFM and stored at -80 degrees Celsius. Embryos were cryosectioned in 12 um sections, stained with Sytox Green 1:1000 and Phalloidin 555 1:300 in PBS overnight (Molecular Probes). Tunel stained tissue was processed after sectioning using the Click-iT TUNEL Alexa Fluor 488 kit according to manufacturer's instructions (Invitrogen). Embryos were mounted in VECTASHIELD Hardset antifade mounting medium and imaged on a Zeiss 880 confocal.
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4

Western Blotting and Co-Immunoprecipitation Antibodies

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The following antibodies were used for Western
blotting and/or co-immunoprecipitation: rabbit anti-Hsp90α (Neomarkers,
RB-119-P), goat anti-Hsp90β (SantaCruz), rat anti-Grp94 (SantaCruz),
mouse anti-Trap1(BD Biosciences), rabbit anti-Aha1 (Abcam), mouse
anti-Aha1 (Abcam), rabbit anti-Actin (SantaCruz), mouse anti-Fkbp59
(Stressgen), Rabbit Rab3GAP1 (Sigma), Mouse Rac (Abcam, detects Rac1
with slight cross reactivity with Rac2), Phalloidin 555 (Invitrogen),
and Phalloidin 647 (Invitrogen).
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5

Antibodies for Western Blotting and Co-IP

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The following antibodies were used for Western blotting and/or co-immunoprecipitation: rabbit anti-Hsp90α (Neomarkers, RB-119-P), goat anti-Hsp90β (SantaCruz), rat anti-Grp94 (SantaCruz), mouse anti-Trap1(BD Biosciences), rabbit anti-Aha1 (Abcam), mouse anti-Aha1 (Abcam), rabbit anti-Actin (SantaCruz), mouse anti-Fkbp59 (Stressgen), Rabbit Rab3GAP1 (Sigma), Mouse Rac (Abcam, detects Rac1 with slight cross reactivity with Rac2), Phalloidin 555 (Invitrogen), and Phalloidin 647 (Invitrogen).
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6

Immunofluorescence Staining of FFPE and Cryosections

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For IF staining on FFPE sections, tissues were deparaffinized and subjected to antigen retrieval with retrieval solution (Beyotime Biotechnology, China) in a pressure cooker for 20 min. Deparaffinization and antigen retrieval were unnecessary for IF staining on cryosections, Tissues were blocked with 5% BSA in PBS containing 0.1% TWEEN 20 (PBS-T) for 30 min at room temperature (RT). For cultured cell IF staining, cells were fixed with 4% paraformaldehyde for 20 min, washed with PBS for three times, and permeabilized with or without 0.1% Triton X-100 in PBS for 15 min, followed by blocking in 2% BSA in PBS-T for 30 min at RT. Subsequently, the samples were incubated with primary antibodies overnight at 4 °C. Fluor-conjugated secondary antibodies were then applied to the samples for 2 h at RT. Filamentous actin (F-actin) was detected using Phalloidin-488 (A12379, Invitrogen) or Phalloidin-555 (A34055, Invitrogen). The nuclei were counterstained with DAPI. Fluorescence images were captured using by Stellaris STED laser scanning confocal microscopy system (LEICA, Germany). The information regarding the antibodies utilized can be found in Supplementary Table 4.
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