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The GC/C III is a gas chromatography-combustion-isotope ratio mass spectrometry (GC/C-IRMS) system designed for stable isotope analysis. It is used to measure the isotopic composition of organic compounds separated by gas chromatography.

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2 protocols using gc c 3

1

Microbial Decomposer Identification via PLFA

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FAME isotope ratios, expressed as δ13C in ‰ relative to VPDB, were measured on a HP5890 GC (Agilent Technologies, Palo Alto, CA, United States) connected to a Delta plus XL IRMS via a combustion interface GC/C III (both Thermo Scientific, Bremen, Germany) following Kramer and Gleixner (2008) (link). Based on previous culture observations (de Carvalho and Fernandes, 2010 (link); Akinwole et al., 2014 (link); Arce Funck et al., 2015 (link); Strandberg et al., 2015 (link)), cell membrane fatty acids, of which we could analyze the carbon isotope ratios, were grouped into bacterial (iso14:0, iso15:0, anteiso15:0, iso16:0, iso17:0, cyclic17:0), algal (C20:4w6, C20:5w3, C22:5w6, C22:6n3), or fungal + algal (C17:1w9, C18:1w7, C18:2w6, C18:3w3, C18:3w6, C18:1w9) PLFA biomarker. Further, we identified several unspecific, universal PLFA (C14:0, C15:0, C16:0, C16:1w5, C16:1w7, C17:0, C18:0). Consequently, to link identity and function of microbial decomposers, we focused on the biomarkers specific for heterotrophic bacteria, as biomarkers for fungi overlap with those for algae.
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2

Compound-Specific Isotope Analysis of Sponge Amino Acids

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Sponge samples were sent to the Isotope Biogeochemistry Laboratory at the University of Hawai'i at Mānoa for δ 15 N and δ 13 C analysis of individual amino acids. Both δ 15 N and δ 13 C, were quantified using gas chromatography/combustion-isotope ratio mass spectrometry (GC/C-IRMS) after amino acid extraction and derivatization. Samples were analyzed using either a Thermo Scientific Delta V Plus or a Thermo Scientific MAT 253 mass spectrometer interfaced with a Thermo Finnigan Trace GC gas chromatograph via a Thermo Finnigan GC-C III. The amino acids measured using this technique were alanine (Ala), glycine (Gly), threonine (Thr), serine (Ser), valine (Val), leucine (Leu), isoleucine (Iso), proline (Pro), aspartic acid (Asp), phenylalanine (Phe) and lysine (Lys). The terminal amide groups in glutamine (Gln) and aspartame (Asn) were cleaved during the chemical isolation of amino acids. This resulted in the conversion of these amino acids to glutamic acid (Glu) and aspartic acid (Asp), respectively. Thus, the isotope value of the combined Glu + Gln was measured (termed Glx), and the isotope value of a combined Asn + Asp was measured (termed Asx). Averaged AA δ 13 C and δ 15 N values from these analyses can be found in Tables S1 andS2, while additional information on CSIA is available in the supplemental document.
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