The largest database of trusted experimental protocols

24 protocols using difco potato dextrose agar

1

Isolation and Cultivation of Yeasts and Molds

Check if the same lab product or an alternative is used in the 5 most similar protocols
One milliliter portions of DLRFR and RODW samples were used for preparation of serial dilutions with sterile water. 100 microliters of the diluted samples were plated on solid RODW medium consisting of RODW and 20 g/L agar, with or without addition of 30 mg/L chloramphenicol for selective cultivation of yeasts and molds. The RODW solid medium was autoclaved at 121 °C for 20 min, without pH correction prior to sterilization. The cultures were incubated at 28 °C for 2–4 days in a BD 56 incubator (BINDER GmbH, Germany) until single colonies were obtained. Single colonies were transferred and repeatedly sub-cultured on fresh RODW, YPD (10 g yeast extract, 20 g peptone, 20 g dextrose, 20 g agar, w/v, pH 6.5) and PDA (39 g DifcoTM Potato Dextrose Agar, BD, France, w/v) media for further studies.
+ Open protocol
+ Expand
2

Enumeration of Microbiological Communities

Check if the same lab product or an alternative is used in the 5 most similar protocols
The enumeration of dominant and culturable yeasts, filamentous fungi, and lactic acid bacteria (LAB) was performed based on colony-forming units (CFU), using decimal serial dilutions in saline solutions (0.9%) and plating onto culture media. Yeast and filamentous fungi were enumerated by using DifcoTM Yeast Extract-Peptone-Dextrose agar (Becton Dickinson, Mexico City, Mexico) and DifcoTM Potato Dextrose agar (BD, Mexico City, Mexico), respectively, and incubated at 25 °C. DifcoTM Lactobacilli MRS (de Man Rogosa Sharp and Merck, BD, Mexico City, Mexico) agar was used for LAB counts, and plates were incubated at 37 °C.
+ Open protocol
+ Expand
3

Isolating Single-Spored Fungal Cultures

Check if the same lab product or an alternative is used in the 5 most similar protocols
To obtain single-spored isolates, leaf samples were dried at room temperature for 2 weeks, then surface sterilized (30 seconds in 15% ethanol, followed by 30 seconds in 5% ethanol and 1% bleach, and rinsed two times for 30 seconds in sterile water). Net blotch-like lesions were excised and placed on a petri dish containing sterile paper towel wetted with sterile water, sealed with Parafilm (Bemis Inc., Neenah, WI, USA) and incubated at 18°C with a 14-hour photoperiod for up to 7 days. Leaves were inspected for conidia formation daily under a binocular microscope from the third day post plating. Cultures where no conidia were produced after 7 days were placed under near UV light for 18 hours at room temperature, followed by 24 hours in the dark at 15°C to stimulate sporulation. Mature conidia were collected with a sterile acupuncture needle and transferred to V8-PDA agar plates [150-ml/l V8 juice (Campbell's Soups Australia, Lemnos, VIC, Australia), 10-g/l agar (Oxoid Ltd., Basingstoke, UK), 10-g/l Difco potato dextrose agar (Becton Dickinson, Sparks, MD, USA), and 3-g/l CaCO3]. Plates were incubated at room temperature for 5 days before 4-mm2 plugs were cut from each colony, then air-dried in a biosafety cabinet overnight before storage at −80°C.
+ Open protocol
+ Expand
4

Arabidopsis and Botrytis cell culture protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols

Arabidopsis thaliana cell suspension culture (ecotype Col-0) was grown in Gamborg B5 medium (Duchefa Biochemie) supplemented with sucrose (2% w/v), α-naphthaleneacetic acid (1 μM) and 6-benzylaminopurine (4.44 μM), with pH adjusted to 5.8. The cell suspension culture has been initiated from leaf tissues. Cells were maintained by subculturing every 7 days 10 ml of saturated culture into 40 ml of fresh media. Cells were grown under a 16 h (light)/8 h (dark) photoperiod and rotated at 140 rpm on an orbital shaker at a temperature of 22 °C.
Botrytis cinerea strain B05.1064 (link) was grown on Difco potato dextrose agar (Becton-Dickinson) under a 16 h (light)/8 h (dark) photoperiod at a temperature of 22 °C. Conidia were harvested in sterile water and filtered through miracloth (EMD Chemicals).
+ Open protocol
+ Expand
5

Isolation and Characterization of Dikaryotic Fungal Mycelium

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dikaryotic mycelium culture tissue isolated from the gleba matrix in the field from specimen MCA 3950 was grown on Difco™ potato dextrose agar (Becton, Dickinson and Co.) for three weeks at room temperature. Genomic DNA was isolated from this tissue using the E.Z.N.A. High Performance Fungal DNA Kit (Omega Bio-Tek) following the protocol for samples with lower DNA content. RNA was extracted using the E.Z.N.A. Fungal RNA Mini Kit (Omega Bio-Tek) followed by a DNase treatment using RQ1 RNase-Free DNase (Promega Co.) following the manufacturer's instructions.
+ Open protocol
+ Expand
6

Culturing Diverse Fungal Strains

Check if the same lab product or an alternative is used in the 5 most similar protocols
C. nitschkei strains OB5-11 (MYA-4105), originally isolated by Milgroom and colleagues from Jisse and Obuse, Kumamoto Prefecture, Japan (Liu et al., 2007) , LFP-E24 (MAFF 410076) and E16 (MAFF 410155) were purchased from American Type Culture Collection (ATCC, Manassas, VA) and the Ministry of Agriculture, Forestry, and Fisheries, Japan (MAFF). C. parasitica strains GH2-6, 3K/87, EP155, EP155 RNA silencing deficient mutant Ddcl2 (Crouch et al., 2020; (link)Segers et al., 2007; Smart et al., 1999) and V. ceratosperma strain AVC53 (Sasaki et al., 2002) C. radicalis strains ph1113 (WSL M2269) and DR1 (WSL 4733) (Hoegger et al., 2002) Fungal strains were cultured on Difco potato dextrose agar (PDA, Becton, Dickinson and Co.) or PDA containing 40 μg/ml hygromycin (PDA-Hyg). All fungal strains used in this study are listed in Table 1.
+ Open protocol
+ Expand
7

Microbial Enumeration in Silage Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
A sample of the silage (25 g) was chopped to a size of 2 cm and mixed with 225 mL saline solution (0.9% NaCl). This mixture was then homogenized for about 2 min. The homogenized silage-saline mixture was then serially diluted and spread on different types of media. For detection of Lactobacillus and Bacillus, Difco™ Lactobacillus MRS agar and Difco™ LB agar Miller (Becton, Dickinson and company, Sparks, MD, USA), respectively were used and samples were incubated for 24 h at 35 • C, while for yeast and fungi determination, Difco™ potato-dextrose agar (Becton, Dickinson and company, Sparks, MD, USA) was used and incubation was carried out for 36 h at 30 • C [28, (link)29] (link).
+ Open protocol
+ Expand
8

Fungal Isolation from Environmental Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Soil or plant material (e.g., apple leaves, flowers, bark, skin) was diluted 10-fold (w/v) with peptone water (1 g/L Bacto Peptone) [48 (link)], vigorously mixed, and shaken (20 min, 25 °C, 250 rpm, on an orbital shaker). The resulting suspensions were diluted and different dilutions (usually 1:50 and 1:100) were plated on DifcoTM potato dextrose agar (PDA; Becton, Dickinson and Company, Le Pont de Claix, France) supplemented with 5 ml chloramphenicol and tetracycline HCl (5 mg/ml in ethanol or water, respectively), and incubated at 22 °C for 2–4 days. Single fungal colonies were transferred to PDA agar plates without antibiotics and repeatedly streaked out until pure cultures were obtained. Isolates were maintained on PDA agar plates and stored in 15% (v/v) glycerol at −80 °C.
+ Open protocol
+ Expand
9

Preparation of Fungal Growth Media

Check if the same lab product or an alternative is used in the 5 most similar protocols
DifcoTM potato dextrose agar (PDA), DifcoTM potato dextrose broth (PDB), and BactoTM malt extract (ME) media were purchased from Becton, Dickinson and Company (Franklin Lakes, NJ, USA); agar from Biolife (Milan, Italy); Comassie Brilliant Blue G 250, bovine serum albumin, 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid) (ABTS), 2,4-dimethoxyphenol (DMOP) and sodium acetate from Sigma-Aldrich (St. Louis, MI, USA); potassium dihydrogen phosphate and potassium hydrogen phosphate from Lach-Ner (Brno, Czech Republic); ethylenediaminetetraacetic acid (EDTA), phosphoric acid, disodium hydrogen phosphate (Na2HPO4) and 96% ethanol from Kemika (Zagreb, Croatia); acetic acid from J. T. Baker Chemicals (Radnor, PA, USA); citric acid from Gram-mol (Zagreb, Croatia). All chemicals were of the highest analytical grade.
+ Open protocol
+ Expand
10

Feline Dermatophytosis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The study protocol was approved by the Faculty of Veterinary Science, Animal Care and Use Committee (MUVS-2019-09-45) and the Faculty of Veterinary Science-Institutional Biosafety Committee (IBC/MUVS-B-005-2562). Skin, nail, and hair specimens were randomly collected from cat patients with feline dermatophytosis during 2019–2020 at Prasu-Arthorn Animal Hospital, Faculty of Veterinary Science, Mahidol University, Thailand. The samples were placed on Difco™ Potato Dextrose Agar (PDA) (Becton, Dickinson and Company, NJ, USA) plates supplemented with 0.1% chloramphenicol. The M. canis isolates were screened based on the morphology of the colonies, including their size, texture, and color. The characteristics, size, and arrangement of microconidia and macroconidia were evaluated by lactophenol cotton blue staining and observed under a light microscope at 10× and 40× magnification [81 ].
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!