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8 protocols using 3 ma s2767

1

Myricetin Modulates Autophagy and Apoptosis Pathways

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Myricetin, Hoechst Staining Kit (G3680) and resazurin were purchased from Solarbio Life Sciences (Beijing, China). 3-MA (S2767) was purchased from Selleck Chemicals (Houston, TX, USA). The primary antibodies included Bax (5023S), Bcl-2 (15071S), Microtubule-associated protein1 light chain 3 (LC-3) I/II (12741S), Beclin-1 (3495S), Phosphatidyl inositide 3-kinase (PI3K) (13666S), phospho-PI3K (4228S), phospho-Akt (4060S), Akt (2920S), Mammalian target of rapamycin (mTOR) (2983S), phospho-mTOR (5536S) were purchased from Cell Signaling (MA, USA). β-actin (60008–1) was purchased from ProteinTech Group (Wuhan, China). Horseradish peroxidase-conjugated secondary antibodies (ZB-2301, ZB-2305) were purchased from ZSGB-Bio (Beijing, China).
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2

Autophagy Regulation via mTOR Pathway

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HBSP was synthesized at Shanghai Ketai Biotechnology. Rapamycin (9904) and Ly294002 (9901), and antibodies against LC3 (2775), Beclin1 (3495), β-actin (4967), phospho-mTOR (5536), mTOR (2983), p-Akt (4060), and Akt (4691) were purchased from Cell Signaling Technology. Antibodies against HIF-1α (ab82832) was purchaded from Abcam. Goat anti-rabbit IgG (7074) and goat anti-mouse IgG (7076) were purchased from Cell Signaling Technology. We purchased 3-MA (S2767) from Selleck Chemicals. Ad-mRFP-GFP-LC3 adenoviral was purchaded from DesignGene (Shanghai).
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3

Investigating Autophagy and MMP12 in Cells

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Antibodies against ACTB (1:1000 dilution, sc-130300, mouse monoclonal, Santa Cruz Biotechnology, Dallas, TX, USA), LC3B (1:1000 dilution, L7543, rabbit polyclonal, Sigma-Aldrich, St. Louis, MO, USA), SQSTM1 (1:1000 dilution, 4814, rabbit monoclonal, Cell Signaling Technology, Danvers, MA, USA), MMP12 (1:2000 dilution, ab52897, rabbit monoclonal, Abcam, Cambridge, UK) were used. Spautin-1 (S7888) and 3-MA (S2767) were from Selleck (Houston, TX, USA). Doxycycline was purchased from Sigma-Aldrich (1226003, St. Louis, MO, USA). Mouse Elastin Peptide were from Elastin Products Company (CB573, Owensville, MO, USA).
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4

Cytokine Induction Assay Protocol

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Reagents were obtained from the following suppliers: 3‐MA (S2767), MG132 (S2619), and rapamycin (S1039) were purchased from Selleck. Poly(I:C) and poly(dA:dT) (Sigma‐Aldrich), DMSO (Sigma, D2650), and HBSS (Gibco, 1441787) were obtained from commercial sources. The enzyme‐linked immunosorbent assay (ELISA) kits for human IFN‐β and IL6 were purchased from Thermo Fisher and Dakewe Biotech.
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5

Molecular Mechanisms of Autophagy Regulation

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AS-IV (C41H68O14, molecular weight =784.97, purity by high-performance liquid chromatography [HPLC] ≥98%) was purchased from Sigma-Aldrich Co. (St Louis, MO, USA). SRT1720 (S1129), EX527 (S1541), rapamycin (S1039), and 3-MA (S2767) were obtained from Selleck Chemicals (Houston, TX, USA). Rabbit polyclonal anti-alpha smooth muscle actin (α-SMA), anti-fibronectin (FN), anti-collagen IV (Col IV), anti-LC3 II, anti-Beclin 1, anti-SIRT1, and anti-NF-κB p65 (acetyl K310) (Ac-p65) antibodies were purchased from Abcam (Cambridge, UK).
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6

Viral Infection Assay in Fish Cells

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Epithelioma papulosum cyprini (EPC) and zebrafish embryonic fibroblast (ZF4) cells were maintained at 28°C in 5% CO2 in medium 199 (Hyclone) and DMEM/F12 (1:1) medium (Invitrogen) supplemented with 10% FBS, 100 U/mL penicillin and 100 mg/mL streptomycin, respectively. Spring viremia of carp virus (SVCV) was propagated in EPC cells. MG132 (S2619) and 3-MA (S2767) were purchased from Selleck. Chloroquine (C6628) and poly I:C (P9582) were purchased from Sigma-Aldrich. Leptomycin B (9676S) was purchased from Cell Signaling Technology.
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7

Autophagy-related protein analysis

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The primary antibodies used were as follows: anti-LC3B (ab192890), anti-SQTSM1 (ab109012), anti-BECN1 (ab207612), anti-ATG5 (ab108327), anti-LAMP1 (ab25630), anti-LGALS3 (ab2785), anti-CTSB (ab125067), anti-CTSL (ab6314), and bafilomycin A1 (ab120497) were procured from Abcam. Anti-HMGB1 (10,829-1-AP), anti-CYCS (10,993-1-AP), anti-ACTB (20,536-1-AP), Alexa Fluor 594 (SA00006-4), Alexa Fluor 488 (SA00006-1), and horseradish peroxidase-conjugated secondary antibodies (SA00001-2 and SA00001-1) were procured from Proteintech Group. Rapamycin (R0395), chloroquine (C6628), leupeptin (L9783), GA (467,214–21-7), and rotenone (R8875) were procured from Sigma-Aldrich. 3-MA (S2767) and CA-074Me (S7420) were procured from Selleck. Z-FF-FMK (108,005–94-3) was procured from Santa Cruz Biotechnology.
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8

Autophagy Evaluation in Cell Lines

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Rabbit anti-LC3 (L8918), mouse anti-alpha-tubulin (T6199) and mouse anti-FLAG® clone M2 (F1804) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Rabbit anti-SQSTM1/p62 (PA5-20839) was from ThermoFisher Scientific (Waltham, MA, USA). Rabbit anti-procaspase-3 (#9665), rabbit anti-cleaved-caspase-3 (Asp-175, clone 5A1E) (#9664), mouse anti-procaspase-9 (#9508), rabbit anti-PARP (#9542), rabbit anti-cleaved-PARP (#5625), rabbit anti-Atg5 (#12964) were from Cell Signaling (Danvers, MA, USA). Mouse anti-cytochrome c (7H8) (sc-13560) was from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Mouse anti-GFP (Ab1218) was from Abcam (Cambridge, UK). Rabbit and mouse horseradish-peroxidase-conjugated secondary antibody were from Cell Signaling. FITC-conjugated secondary antibody Alexa Fluor 488, MitoTracker Orange CMTM Ros (mitochondrial selective dye) (M7510) and the LysoTracker Green DND-26 (lysosomal selective dye) (L7526) were acquired from Molecular Probes (ThermoFisher Scientific). Trehalose (T0167), rapamycin (R0395), chloroquine (CQ) (C6628), ammonium chloride (NH4Cl) and docetaxel were purchased from Sigma-Aldrich. 3-MA (S2767) was obtained from Selleckchem (Munich, Germany).
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