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696 protocols using horseradish peroxidase

1

Quantitative Lactate and Glucose Assay

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Following treatment, 100 μl samples were taken from the cell culture medium and immediately frozen at −80°C for subsequent analysis. The lactate assay was performed using 1 μl of each sample with 9 μl of water in a 96-well cell culture plate, alongside lactate standards for comparison. Approximately 190 μl of reaction mixture containing 2.5 U/L lactate oxidase (Merck-Sigma Aldrich, St Louis, MO), 50 U/L horseradish peroxidase (Merck-Sigma Aldrich, St Louis, MO), and 20 μM Amplex Red (Thermo Fisher Scientific-Invitrogen, Grand Island, NY) in 0.1 M sodium phosphate buffer (pH 7.5) was added to each well. The reactions were protected from light and incubated for 30 min at 37°C. Fluorescence was measured (Ex 520 nm, Em 580–640 nm) using a GloMax Discover system (Promega, Madison, WI). Glucose assays were performed using a similar method, however with a reaction mixture containing 135 U/L glucose oxidase (Merck-Sigma Aldrich, St Louis, MO), 50 U/L horseradish peroxidase (Merck-Sigma Aldrich, St Louis, MO), and 20 μM Amplex Red (Thermo Fisher Scientific-Invitrogen, Grand Island, NY) in 0.1 M sodium phosphate buffer (pH 6).
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2

Colorimetric Hydrogen Peroxide Assay

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A 0.5 mg/mL of leucocrystal violet solution was obtained by dissolving 10 mg of leucocrystal violet (Sigma-Aldrich, St. Louis, MO, USA) in 20 mL of distilled water (DW). A 1.0 mg/mL horseradish peroxidase solution was obtained by dissolving 10 mg of horseradish peroxidase (Sigma-Aldrich, St. Louis, MO, USA) in 10 mL of DW. A series of H2O2 solutions, the concentrations of which were 0.05 μg /mL, 0.10 μg /mL, 0.25 μg/mL, 0.50 μg /mL, 1.0 μg /mL, 2.5 μg /mL, and 5.0 μg /mL, were obtained by diluting 30% H2O2 stock solution (Fisher Scientific, Pittsburgh, PA, USA) with DW.
To obtain a H2O2 solution calibration curve, 100 μL of 0.5 mg/mL leucocrystal violet solution and 50 μL of 1.0 mg/mL horseradish peroxidase solution were added into 100 μL, 50 μL, 20 μL, 10 μL, 5 μL, 2.5 μL, and 1.25 μL of H2O2 solutions and then diluted to 10 mL with acetate buffer (pH = 4.5). The concentrations of H2O2 in these solutions were 5.0 μg /mL, 2.5 μg/mL, 1.0 μg /mL, 0.5 μg /mL, 0.25 μg /mL, 0.1 μg /mL, and 0.05 μg /mL respectively. After vibrated for 30 s, these solutions were measured with an Ultraviolet-visible (UV-Vis) spectrophotometer (UV-2600, Shimadzu Co., Kyoto, Japan) at a wavelength of 596 nm against a reference prepared using the same method but with no hydrogen peroxide. A calibration curve was thus obtained [16 (link)].
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3

Mitochondrial H2O2 Release Assay

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Mitochondria were suspended in buffer B in a 1 ml cuvette inside a spectrophotometer (QM-8; Photon Technology International (PTI), Birmingham, NJ, USA). The rate of H2O2 release was measured using Amplex red (12.5 μM; Molecular Probes, Eugene, OR, USA) and horseradish peroxidase (0.1 U/ml; Sigma) at excitation and emission wavelengths of 530 and 583 nm, respectively. H2O2 is the direct product of O•−2 when catalyzed by O•−2 dismutase (SOD) in the absence of nitric oxide. H2O2 levels were calibrated over a range of 10–200 nM H2O2 (Sigma) added to buffer B in the absence of mitochondria and in the presence of Amplex red and horseradish peroxidase. Mitochondrial volume change (increase/decrease) was assessed by monitoring changes in 90° light scattering at an excitation and emission wavelength of 520 nm inside the same cuvette-based PTI.
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4

NADPH Oxidase Activity Assay in Differentiated Cells

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Differentiated ER-Hoxb8 cells (0.5 × 106) were resuspended in a physiological salt solution (PSS; 115 mM NaCl, 5 mM KCl, 1 mM KH2PO4, 10 mM D-Glucose, 1 mM MgSO4, 1.25 mM CaCl2 and 25 mM HEPES, pH 7.4) containing 20 µM luminol (Sigma-Aldrich) and 10 U/mL horseradish peroxidase (Sigma-Aldrich). The NADPH oxidase activity was measured overtime by chemiluminescence after addition of fMLF (Sigma-Aldrich), PMA (Sigma-Aldrich) or LPS (from E. coli, Sigma-Aldrich). Luminescence photon emission was recorded every 30 s for 4 h at 37 °C in a CLARIOstar plate reader (CLARIOstar, BMG LABTECH, Ortenberg, Germany).
Differentiated HL-60 cells (2 × 106) were resuspended, for 10 min at 37 °C, in PSS containing 30 µM Amplex Red (Sigma-Aldrich) and 1 U/mL horseradish peroxidase (Sigma-Aldrich). The NADPH oxidase activity was measured overtime by fluorescence after addition of fMLF with a Quantamaster spectrofluorimeter QM-8/2003 (Photon Technology International, Inc., Lawrenceville, NJ, USA).
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5

Quantifying ROS response in N. benthamiana

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The plasmid was transferred into the A. tumefaciens GV3101 strain and injected into N. benthamiana leaves (grown in a greenhouse for two and a half weeks). After 48 h of injection, the injected N. benthamiana leaves were made into discs with a hole punch (diameter, 4 mm) and put into 96 empty plates (Lumitrac 200, Greiner, no.655075). The pieces were placed in each well individually, and 200 μL ddH2O was added. Four replicates were taken for each sample. On the next day, water was replaced with a mock solution containing 34 mg l−1 (w/v) luminol (Sigma-Aldrich, Shanghai, China) and 20 mg l−1 (w/v) horseradish peroxidase (Sigma-Aldrich), and a ROS induced solution containing 34 mg l−1 (w/v) luminol (Sigma-Aldrich), 20 mg l−1 (w/v) horseradish peroxidase (Sigma-Aldrich) and 100 nM flg22. The luminescence was detected for 1 h with a signal integration time of 2 min using SpectraMax L microplate reader (Molecular Devices, Sunnyvale, CA, USA).
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6

Protein Extraction and Analysis Protocol

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Cells were lysed using RIPA buffer: 150 mM NaCl, 50 mM Tris/ HCl, pH 7.4, 0.1% SDS, 1% NP-40, and a protease inhibitor cocktail (Sigma–Aldrich, St. Louis, MO) and cleared by centrifugation at 12,000g at 4°C. For collection of conditioned media cells were serum starved overnight. Protein concentrations in whole cell lysates were determined using a Pierce BCA Protein Assay Kit (Thermo Scientific, Waltham, MA). Protein samples were separated by SDS-PAGE using 10% Tris-glycine gels under non-reducing or reducing conditions, transferred onto PVDF membranes (Bio-Rad Laboratories, Inc., Hercules, CA) and analyzed using rabbit anti human TMPRSS11d (HAT Ab1) (ab127031, Abcam, Cambridge, MA), rabbit anti human TMPRSS11d (HAT Ab2) (HPA052834 Sigma) or mouse anti V5 antibody (Invitrogen, Life Technologies, Grand Island, NY). For detection, secondary antibodies conjugated with horseradish peroxidase (Chemicon, Temecula, CA) were used in combination with ECL Western Blotting Substrate or Super-Signal West Femto Chemiluminescent Substrate (Pierce, Rockford, IL).
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7

Western Blot Analysis of HVRP1 in Transfected HEK293A Cells

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Total protein from transfected and non-transfected HEK293A cells was collected with lysis buffer (50 mM Tris-HCl, pH 7.5, 5 mM EDTA, 150 mM NaCl, 1% Triton-X 100, and protease inhibitor cocktail [Sigma]). The cell lysates were centrifuged at 13,000 rpm for 10 minutes at 4°C. Proteins from supernatants were separated by SDS-PAGE (4–20%, Tris-Glycine, Life Technologies). After gel electrophoresis, proteins were transferred to polyvinylidene difluoride (PVDF) membranes (Millipore). The membranes were incubated with anti-HVRP1 antibody at a 1∶1000 dilution, or anti-HVRP1 antibody neutralized by antigen peptide (1∶1000 dilution of a 1 µg/µl solution). Mouse anti-rabbit secondary antibody was conjugated with horseradish peroxidase (Chemicon International) and used at a 1∶50,000 dilution. The membranes were stripped by washing with a mild stripping buffer (1.5% glycine, 0.1% SDS, 0.5% Tween-20, pH 2.2) for 2×10 minutes, then PBS 2×10 minutes, and TBST 2×10 minutes. Membranes were then re-probed with anti-β-actin antibody conjugated to HRP (Abcam) at a 1∶5000 dilution. All proteins interacting with primary antibodies were visualized with Super Signal West Pico chemiluminescent substrate (Thermo Fisher).
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8

Western Blot Analysis of Signaling Pathways

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The protein concentration in cell lysates was determined by BCA assay (Pierce, Rockford, IL) and lysates were separated by 4–12% reducing SDS-PAGE and blotted onto polyvinylidene difluoride (PVDF) membranes (Invitrogen). The following primary antibodies were used for detection: rabbit anti- matriptase (CalBioChem, Philadelphia, PA), rabbit anti-phospho cMet (Y1234/1235), anti-phospho Gab1 (y627), anti-Gab1, anti-phospho AKT (S473), anti-AKT (C73H10), mouse anti-human c-Met (25H2) (all from Cell Signaling Technology), and mouse anti-beta-actin (Sigma). For detection, secondary antibodies conjugated with either alkaline phosphatase (Sigma) or horseradish peroxidase (Chemicon, Temecula, CA) in combination with either the chromogenic substrate nitro-blue tetrazolium and 5-bromo-4-chloro-3′-indolyphosphate (Roche, Indianapolis, IN) or Super-SignalWest Femto Chemiluminescent Substrate (Pierce, Rockford, IL) were used.
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9

Quantifying Apoptosis in Cell Samples

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Mission slides were analysed for apoptosis events using the single-stranded DNA (ssDNA) detection technique [37 (link)]. The glass slides with glutaraldehyde-fixed cells were heated for 20 minutes at 75°C in neat formamide, rinsed with H2O, blocked with 3% non-fat dry milk for 1h at room temperature, reacted with a monoclonal antibody to ssDNA (1:10) coupled with horseradish peroxidase (Chemicon), then colored with freshly-prepared diaminobenzidine (DAB) and counter-stained with hematoxylin. Fixed cells positive for DAB (i.e.ssDNA) were apoptotic at the time of in-flight fixation, cells stained with hematoxylin were viable at the same moment. 11 optical fields were counted on each slide and the proportion of apoptotic cells to non-apoptotic cells at the time of fixation was determined.
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10

Western Blot Analysis of Protein Expression

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The following antibodies were used for western blot analysis: anti- GLI1, -K5, -K14, -β-actin (Santa Cruz Biotechnology, Santa Cruz, CA), anti-CRD-BP mouse monoclonal antibody (generated in our lab); secondary antibody conjugated with horseradish peroxidase (Chemicon, Billerica, MA).
In order to obtain whole cell lysates for western blot analysis, the cells were lysed using a denaturing RIPA buffer containing PBS (pH 7.4), 0.5% sodium deoxycholate, 0.1% SDS, 1% (v/v) IGEPAL, 100 mM sodium orthovanadate, and proteinase inhibitor cocktail (Sigma, St. Louis, MO). Frozen tissues were ground in pestle and mortar to fine powder and RIPA lysis buffer was added to it for homogenization and the lysates were used for western blot. Immunoblotting procedures were performed as described previously (Spiegelman et al., 2000 (link)).
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