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41 protocols using light mineral oil

1

Single-cell RNA Sequencing of S2 Cells

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S2 cells were harvested without the requirement of dissociation (S2 cells grow as single cells). Single-S2-cell suspensions were resuspended in PBS0 with 1 μg/mL DAPI, and passed through a 20-μm mesh. A total of 360 single cells were index sorted using a BD FACS Influx in 384-well hardshell plates (BioRad) that were pre-filled with 5 μL of light mineral oil (Sigma Aldrich) and 50 nL of 0.25 μM CelSeq2 primer (CS2001 to CS2384, Table S4) (Muraro et al., 2016 (link)). Doublets, debris, and dead cells were excluded by gating forward and side scatter in combination with the DAPI channel.
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2

Preimplantation Mouse Embryo Culture

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Preimplantation stage mouse embryos were collected at desired embryonic day by flushing uterine horns or oviducts with Dulbecco's Modified Eagle Medium (DMEM) with Hepes (10 mM, pH 7.3) media. Embryos were rinsed in flushing and holding media three times before culturing in vitro in micro-droplets containing KSOMaa (Life Technologies) and solvent control-DMSO (Sigma Aldrich), which were layered with light mineral oil (Sigma Aldrich) When necessary, LDN193189 (Stemgent) or Noggin (R&D Systems) were included in KSOMaa micro-droplets. Mouse embryos were staged according Gardner (1997) (link).
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3

ICSI with Mitochondrial Supplementation

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A droplet of 5 uL of the mitochondrial suspension was placed in a microinjection dish next to the sperm, wash and oocyte droplets. All droplets were covered by light mineral oil (Sigma, Sydney, Australia). ICSI and mitochondrial supplementation were performed under an inverted microscope (Olympus IX71, Tokyo, Japan) equipped with an attached NK2 micromanipulator (Eppendorf AG, Eppendorf, Germany). ICSI was performed by catching a single sperm cell using a microinjection pipette (The Pipette Company, Origio, Adelaide, Australia), then injected into an oocyte that was held by a holding pipette (The Pipette Company), whilst mitochondrial supplementation was performed by catching a single sperm and then expelling it into the drop containing the mitochondria. The sperm cell was recaptured again and aspirated into the injection pipette along with ~3pl mitochondrial isolate. The sperm cell and mitochondria were then injected into the oocyte. Only surviving and non-lysed oocytes progressed to in vitro embryo culture.
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4

Alginate Microgels via Microfluidics

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Alginate microgels were prepared using external gelation of monodisperse w/o emulsions generated using a microfluidic flow-focusing device as previously detailed. [17 ] Flow focusing was achieved using light mineral oil (Sigma Aldrich) with 2% SPAN 80 (Sigma Aldrich) as an immiscible carrier phase. Downstream of the emulsifying junction, CaCl2 infused mineral oil replaced the carrier phase. Flow rates were 1.5, 3, and 9 kL/min for the aqueous, mineral oil, and calcium infused mineral oil, respectively. The microgels were then collected by centrifugation at (10 rcf) for 3 minutes. For the studies involving incubation at 37 °C and/or lentivector encapsulation, all solutions were sterile filtered and the entire process was carried out in sterile conditions. Microgels were imaged using fluorescent and phase contrast microscopy (Zeiss Axio Vert A.4, Oberkochen, Germany), and the resulting images were analyzed using Image J (NIH, Rockville, MD, USA).
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5

Atmospheric Plasma Treatment of Open-Cell Foam

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A commercial open-cell foam (Angst+Pfister, Milan, Italy) characterized by polyester polyol-based polyurethane structure with pore density of 45 pores per inch and porosity of about 97% was used as substrate for the plasma treatments and absorption tests.
Helium (Air Liquide, 99.999%, Milan, Italy), oxygen (Air Liquide, 99.999%, Milan, Italy) and ethylene (C2H4, Air Liquide, 99.95%, Milan, Italy) were used to feed the atmospheric pressure plasma.
The liquids used for the absorption tests included bidistilled water, octane (Honeywell, purity = 99%, Seelze, Germany), toluene (Sigma-Aldrich, 99.9%, Steinheim, Germany), hexadecane (Sigma-Aldrich, 99%, Steinheim, Germany), light mineral oil (Sigma-Aldrich, viscosity at 40° = 14.2–17.2 cps, St. Louis, MO, USA), heavy mineral oil (Sigma-Aldrich, viscosity at 40° = 63.6–70.4 cps, St. Louis, MO, USA), motor oil (Petronas SYNTIUM MP 0W-30, viscosity at 40° of 54.1 cps, Turin, Italy), gasoline and diesel oil. HCl (Sigma-Aldrich, 37 wt%, Steinheim, Germany), NaOH (J.T.Baker, ≥95.5%, Deventer, Holland) and NaCl (Sigma-Aldrich, ≥99.5%, Buchs, Switzerland) were used to prepare acidic, basic and saline aqueous solutions, respectively. In oil/water separation tests, Sudan Red III (ABCR, Karlsruhe, Germany) was used to dye mineral oil for better visualization.
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6

Olfactory Preferences Profiling Protocol

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Odors were purchased at their highest available purity (>97%) and diluted to 1 Pa in light mineral oil (Sigma Aldrich; St. Louis, MO) prior to placing in the flange caps / odor ports and included L-carvone, decanol, geraniol, guaiacol, and thioglycolic acid (Sigma Aldrich; St. Louis, MO). Odors in their stock concentration and diluted concentration were each stored under nitrogen to maintain purity. The panel of odors selected was based upon our prior work (Jagetia et al., 2018 (link)), wherein we found that [at least in a different background strain of mice] these odors elicited the widest assortment of odor preferences, with decanol and thioglycolic acid being investigated the least and most, respectively.
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7

Synthesis of Metal Oxide Nanoparticles

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Nickel sulfate hexahydrate
(≥98%), cobalt sulfate heptahydrate (≥99%), manganese
sulfate monohydrate (≥99%), ammonium oxalate (≥99%),
ammonium hydroxide (28% NH3 in H2O, purity ≥99.99%),
light mineral oil, and lithium hydroxide (≥98%) were purchased
from Sigma-Aldrich. All chemicals were used as received without further
treatment. All the solutions were prepared with deionized water.
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8

Electrophysiological and Oviposition Bioassays for Potato Tuberworm

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Compounds tested in electrophysiological assays are listed in Table1. Chemicals were purchased from Sigma-Aldrich (Milan, Italy) and were 85–99% pure. They were selected from compounds identified in the headspace of potato tubers and leaves and were chosen to represent the most EAG-active compounds in different chemical categories and the differential sensitivity between sexes.11 ,15 (link) Furthermore, one plant ketone and acetate and two sex pheromone components of potato tuberworm were tested in SCR experiments. For each compound, 100 µg µL−1 stock solutions in both light mineral oil and hexane (Sigma-Aldrich, Milan, Italy) were prepared and stored at −20 °C.
In SCR experiments, a 10 µL aliquot of 1 µg µL−1 hexane solution of a test compound was adsorbed on a piece of filter paper (1 cm2), exposed to the air for 1 min to allow solvent evaporation and inserted into a Pasteur pipette.
In oviposition bioassays, stimuli were 100 µg µL−1 mineral oil solutions of hexanal, octanal, nonanal and 1-octen-3-ol loaded into 35 mL volume polyethylene vials, with a 1 mm diameter hole in the lid, at doses of 4, 40 and 400 mg. In the warehouse experiment, a 1:1 (v/v) mineral oil solution of octanal loaded into low-void polymer disc dispensers (Trécé Inc., Adair, OK) (10 mL dispenser−1) was used.
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9

Gelatin Methacryloyl Microgel Synthesis

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GelMA was synthesized as per previously reported protocol [24 (link)], by reacting methacrylic anhydride with gelatin, purified using 12–14 kDa cut-off dialysis membrane, and freeze-dried. Both fish GelMA and porcine GelMA were synthesized from gelatin from cold fish water skin (Sigma-Aldrich) and type A gelatin from porcine skin (Sigma-Aldrich), respectively. The freeze-dried GelMA was reconstituted to a 10% (w/v) final solution. The 10% GelMA solution from both fish and porcine sources was mixed at a 2:8 ratio, respectively, and then 0.5% lithium phenyl (2,4,6-trimethylbenzoyl) phosphinate (LAP) (TCI chemicals, OR) was added. The formed GelMA solution was loaded into a 10 ml syringe and extruded at an air pressure of 40, 60, 100, and 180 kPa. Light mineral oil (Sigma-Aldrich, St. Louis, MO) with nonionic surfactant (3% Span 80, Sigma-Aldrich) was used in the collection bath to collect GelMA microgels. A visible or near-ultraviolet (UV) light source (GHDO, SOVOL, Shenzhen, China) of 405 nm was used to crosslink GelMA droplets to form microgels. Only the oil/water collection bath was exposed to the light source during microgel production. The formed microgels were washed three times with DI water followed by centrifugation to remove the oil and surfactant. The collected microgels were used for further studies.
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10

Microfluidic Hydrogel Encapsulation

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Flow-focusing microfluidic geometry was utilized to form polymer droplets. Both shielding and crosslinker phases consisted of light mineral oil (Sigma) with 2% SPAN80 (Sigma). The crosslinker phase also contained an emulsion, at a ratio of 1:15, of 20 mg/mL dithiothreitol (DTT) (Sigma) in PBS. A co-flowing shielding phase protected the macromer solution – a 5% PEG-4MAL (10 kDa or 20 kDa, Laysan Bio) solution containing molecules or cells to be encapsulated – from the crosslinker phase until droplets of the macromer solution were formed. DTT rapidly diffused into macromer droplets, forming crosslinked microgels. To functionalize hydrogel with GRGDSPC (‘RGD’, AAPPTec), macromer was reacted for 20 minutes before encapsulation with 2.0 mM RGD in buffer solution containing 4 mM triethanolamine (Sigma). After formation, microgels were washed 5 times by centrifugation to remove mineral oil and excess DTT.
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