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19 protocols using birinapant

1

PDX Tumor Regression with Targeted Therapies

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Female 5–6-week-old NRG mice (Jackson labs stock #007799) were implanted with HCI-011 patient-derived xenograft (PDX) tumor fragments using a previously described protocol with estrogen supplementation (42 (link)). When tumors reached approximately 100 mm3, mice were randomized into treatment or control groups. Mice received either vehicle control (15% captisol IP, 3×/week for 5 weeks), birinapant (20 mg/kg IP, 3×/week for 5 weeks), fulvestrant (200 mg/kg subQ, 1×/week for 5 weeks), or the combination of birinapant and fulvestrant at the same doses as single agents. For birinapant treatment, birinapant (Medchem Express, HY-16591) was dissolved in 15% captisol at a concentration of 2 mg/mL (made fresh every time), and 100 μL/10 g mouse body weight was injected intraperitoneally. For fulvestrant treatment, 250 mg of fulvestrant (Selleck Chemicals, S1191) was dissolved in 0.5 mL DMSO, incubated at 37°C for 15 minutes and then diluted 1:20 with corn oil to give a final concentration of fulvestrant of 25 mg/mL (made fresh every time). 80 μL/10 g mouse body weight was injected subcutaneously. Animal experiments were all conducted in compliance with institutional guidelines and regulations after approval from the University of Utah Institutional Animal Care and Use Committee, under protocol 21-06008.
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2

Cytotoxicity Evaluation of Chemotherapeutics

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Gemcitabine (cat# S1714) and Cisplatin (cat# S1166) were purchased from Selleck Chemicals (Houston, TX, USA), and LCL161 (cat# HY-15518) and Birinapant (cat# HY-16591) were from purchased from MedChemExpress (Monmouth Junction, NJ, USA). Drug response tests were performed as previously described (17 (link)).
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3

Modulating Tumor Growth via Combination Therapy

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Py8119-Ova-ZsGreen cells and Py8119 B2m−/− exp-KO-mCherry cells were mixed at a 4:1 ratio, and tumor cells (3.5×105) were inoculated into a mammary fat pad of 8-week-old female C57BL/6J mice. When tumors were palpable (day 7), mice were treated with either solvent (12% SBE-β-CD, 100 μl daily, i.p. and 50 μl oral gavage; MedChemExpress), cIAP inhibitor (Birinapant, 10 mg/kg daily, intraperitoneal injection, MedChemExpress), VPS34 inhibitor (SAR405, 10 mg/kg daily, oral gavage, MedChemExpress), or the combination of both drugs. Endpoints were tumor diameter of >20 mm, tumor ulceration, or death of mice. Tumor size was recorded twice per week.
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4

Combination Therapy Effects on Organ Histology

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Female C57BL/6J mice were treated for 21 days with either solvent (12% SBE-β-CD, 100 μl daily, i.p. and 50 μl oral gavage; MedChemExpress), cIAP inhibitor (Birinapant, 10 mg/kg daily, intraperitoneal injection, MedChemExpress), VPS34 inhibitor (SAR405, 10 mg/kg daily, oral gavage, MedChemExpress), or the combination of both drugs. Following treatment, mice were euthanized for whole animal immersion fixation in Bouin’s solution (Sigma Aldrich). The chest, abdomen, and skin surrounding the neck of mice were opened prior to immersion. After 72 hrs of fixation, tissues were decalcified, embedded in paraffin, and sectioned with a microtome. Sections were stained with hematoxylin and eosin. Full necropsy and histological analysis of major organs, including the liver, lung, kidney, and heart were performed. Images were acquired on a Nikon Ti-E widefield light microscope.
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5

Pharmacological Targeting of Epigenetic Regulators

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Birinapant (IAP inhibitor) and GS-9620 (TLR-7 agonist) were purchased from MedChem Express (Monmouth Junction, NJ, United States). PEP005 (PKC activator), SAHA (Vorinostat, HDAC inhibitor), JQ-1 (BRD4 inhibitor), GSK525762A (BRD4 inhibitor), Ro5-3335 (CBFβ/RUNX inhibitor), and Al-10-49 (CBFβ/RUNX inhibitor) were purchased from Cayman Chemical (Ann Arbor, MI, United States), Santa Cruz Biotechnology (Dallas, TX, United States), BioVision (Milpitas, CA, United States), ChemScene (Monmouth Junction, NJ, United States), Merck (Darmstadt, Germany), and Selleck (Houston, TX, United States), respectively. Phorbol myristate acetate (PMA) and TNF-α were purchased from Wako Pure Chemical (Osaka, Japan) and BioLegend (San Diego, CA, United States), respectively.
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6

Birinapant Pretreatment in Liver Cancer

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The liver cancer cell lines Huh7, HepG2 and H22, and the hepatocyte line AML12 were obtained from the Chinese Academy of Science. All cells were cultured in DMEM (Gibco; Thermo Fisher Scientific, Inc.) containing 10% FBS (PAN-Biotech GmbH) with 1% penicillin and 1% streptomycin. Cells were maintained at 37°C in a humidified atmosphere containing 5% CO2. Huh7, HepG2 and H22 cells were pretreated in a cell incubator with 300 nmol/ml birinapant (MedChemExpress) at 37°C for 24 h prior to subsequent experimentation.
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7

Apoptosis Induction Pathway Dissection

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LCL-161,
AZD5582, birinapant,
and BV6 were obtained from MedChemExpress. Human TNF-α was obtained
from Miltenyi Biotec. MG132, MLN4924, and MLN7243 were purchased from
SelleckChem.
Primary antibodies used for immunoblotting include
BIRC2 (BioRad; VMA00532; clone AB01/3B4), cIAP2 (Cell Signaling; 3130S;
clone 58C7), XIAP (Cell Signaling; 14334S; clone D2Z8W), VHL (Cell
Signaling; 68547S), CRBN (Sigma-Aldrich; SAB2106014), Ikaros (Cell
Signaling; 14859S; clone D6N9Y), Aiolos (Cell Signaling; 15103S; clone
D1C1E), HIF-1α (BD BioSciences, 610958; clone 54), α-tubulin
(Sigma-Aldrich; T5168; clone B512), and beta-actin (Sigma-Aldrich;
A1978). Secondary antibodies include anti-rabbit IgG HRP-linked antibody
(Cell Signaling; 7074) and anti-mouse IgG HRP-linked antibody (Cell
Signaling; 7076).
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8

Birinapant and BV6 Sensitize Cells to Radiation

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The bivalent Smac mimetic birinapant was purchased from Medchemexpress (MCE, Medchemexpress CO. Ltd) and BV6 was purchased from Selleck (Blue Wood Chemical Co., Ltd.). Cells were treated with 10 µmol/L birinapant or BV6 as indicated, or with the equivalent amount of solvent dimethyl sulphoxide (DMSO, Beijing Dingguo Changsheng biotechnology CO. Ltd) 1 hour before irradiation. Irradiation with single doses of 2‐8 Gy was performed by a 137Cs γ‐source (Atomic Energy of Canada Limited, Gamma cell 40). The source‐target distance was 30 cm, and the dose rate was 0.99 Gy/min.
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9

Cell Culture Reagents and Compounds

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Cell culture reagents and chemicals were from Sigma Aldrich (St. Louis, MO, USA) or Thermo Fisher Scientific (Waltham, MA, USA) unless otherwise stated. Drugs and biologics as follows: ABT-737 (Selleck Chemicals); CHX (Sigma); YOYO3 and SYTO reagents (Life Technologies/Thermo Fisher Scientific), mTNFα and mTRAIL (Peprotech, Rocky Hill, NJ, USA); zVAD-fmk (ApexBio, Houston, TX, USA), birinapant (MedChem Express). Fluorophores: FITC (Cat. No. 46425, Thermo Fisher Scientific), Alexa Fluor 488 5-SDP Ester (Cat. No. A30052, Thermo Fisher Scientific), Alexa Fluor 594 NHS Ester (Cat. No. A37572, Thermo Fisher Scientific).
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10

Examination of Cell Death Mechanisms

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Birinapant and LCL-161 were purchased from MedChemExpress. zVAD-fmk was purchased from Bachem. Necrostatin-1 was obtained from Tocris Bioscience. MRT67307, TPCA-1 [5-(p-Fluorophenyl)-2-ureido]thiophene-3-carboxamide and Protease Inhibitor Cocktail Set V were purchased from EMD Millipore.
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