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8 protocols using cy2 or cy3 labeled secondary antibody

1

Immunofluorescence Localization of Glucokinase and Regulatory Protein

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Cultured cells were grown on poly-L-lysine-coated (Sigma- Aldrich, St. Louis, MO, United States) glass cover slides in 24-well plates, fixed with 4% paraformaldehyde in PBS for 30 min, washed with Tris–HCl buffer (pH 7.8) containing 8.4 mM sodium phosphate, 3.5 mM potassium phosphate and 120 mM NaCl, and incubated in the same buffer containing 1% bovine serum albumin (BSA) and 0.2% Triton X- 100 for 10 min. Samples were then incubated with the following primary antibodies overnight at room temperature: rabbit anti-GK (1:100, sc 7908; Santa Cruz Biotechnology), rabbit anti-GKRP (1:100, sc-11416; Santa Cruz Biotechnology). Subsequently, cells were incubated with Cy2- or Cy3 -labeled secondary antibodies (Jackson ImmunoResearch Laboratories), counter stained with the DNA stain, TOPRO-3 (1:1000, Invitrogen), and analyzed using confocal laser microscopy Carl Zeiss, LSM700).
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2

Adenoviral Infection in Rat Brain

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In order to analyze the specificity of the adenovirus in vivo, the animals were injected with the adenovirus, and the brains were collected at 48 and 96 h. The rat brains were fixed in 4% PFA by immersion for 48 h. Free-floating frontal hypothalamic slices of 40 μm thickness were obtained by a cryostat and subsequently processed. Tissues were stained with chicken anti-vimentin (1:200; Millipore, Billerica, MA, USA), mouse anti-GFAP (1:200; Millipore), and rabbit anti-NeuN (1:5000; Abcam, Cambridge, MA, USA) antibody diluted in Tris-HCl buffer (pH 7.8) containing 1% bovine serum albumin. After extensive rinsing, the sections were incubated for 2 h at room temperature with Cy2- or Cy3-labeled secondary antibodies (1:200; Jackson ImmunoResearch Laboratories). TOPRO-3 (1:1000; Invitrogen) was used as nuclei staining. The slides were visualized and captured using confocal laser microscopy LSM 700 (Zeiss).
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3

Multimarker Immunofluorescence Assay for Cultured Cells

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Cultured cells were grown on poly-L-lysine-coated (Sigma-Aldrich, St. Louis, MO, USA) glass cover slides in 24-well plates, fixed with 4% paraformaldehyde in PBS for 30 min, washed with Tris-HCl buffer (pH 7.8), and incubated in the same buffer containing 1% bovine serum albumin (BSA) and 0.2% Triton X-100 for 5 min at 22°C. Samples were then incubated with the following primary antibodies overnight at 22°C: rabbit anti-GK (1∶100, sc 7908; Santa Cruz Biotechnology), rabbit anti-GKRP (1∶100, sc-11416; Santa Cruz Biotechnology), mouse anti-vimentin (1∶200, Dako), rabbit anti-GFAP (1∶200, DAKO), mouse anti- MAP2 (1∶50, Chemicon Temecula, CA), mouse anti- neurofilaments (1∶1, Hybridoma Data Bank), goat anti- DARPP32 (1∶50, Santa Cruz Biotechnology), rabbit anti- GLUT2 (1∶100, Alpha Diagnostic International, San Antonio, TX), chicken anti-MCT1 (1∶100, Millipore, Temecula, CA), rabbit anti-MCT4 (1∶20, Millipore) and anti-Kir1.6 (1∶200, Santa Cruz Biotechnology). Cells were next incubated with Cy2- or Cy3-labeled secondary antibodies (Jackson ImmunoResearch Laboratories), counterstained with the DNA stain, TOPRO-3 (1∶1000, Invitrogen), and analyzed using confocal laser microscopy Carl Zeiss, LSM700).
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4

Adenovirus Specificity in Rat Brains

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In order to analyze the specificity of the adenovirus in vivo, the animals were injected with the adenovirus, and brains were collected at 48 and 96 h. The rat brains were fixed in 4% PFA by immersion for 48 h. After fixation, thick frontal sections of the hypothalamus (40 μm) were cut with a cryostat, and subsequently free-floating processed. Tissues were stained with mouse anti-vimentin (1:200, DAKO), rabbit anti-GFAP (1:200, DAKO) and mouse anti-HuC (1:200, Invitrogen). The antibody was diluted in a Tris-PO4 buffer (pH 7.8) containing 1% bovine serum albumin. After extensive washing, the sections were incubated for 2 h at room temperature with Cy2- or Cy3-labeled secondary antibodies (1:200; Jackson ImmunoResearch Laboratories). These samples were counterstained with the DNA stain, TOPRO-3 (1:1000; Invitrogen). The slides were analyzed using confocal laser microscopy LSM 700 (Zeiss).
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5

Immunocytochemistry of Tanycyte Cultures

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Cultured cells were grown on poly-L-lysine-coated (Sigma-Aldrich) glass cover slides in 24-well plates, fixed with 4% PFA in PBS for 30 min, washed with Tris-HCl buffer (pH 7.8) and incubated in the same buffer containing 1% BSA and 0.2% Triton X-100 for 5 min at RT. Samples were then incubated with mouse anti-vimentin (1:200, Dako) to evaluate the purity of tanycyte cultures. Cells were next incubated with Cy2- or Cy3-labeled secondary antibodies (Jackson ImmunoResearch Laboratories), counterstained with the DNA stain, TOPRO-3 (1:1000, Invitrogen), and analyzed using confocal laser microscopy (Carl Zeiss, LSM700).
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6

Immunohistochemical Staining of Paraffin and Cryostat Sections

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Four-µm paraffin sections were deparaffinized in xylene and rehydrated in ethanol and PBS. Sections were subsequently boiled in 0.1 M citrate buffer to improve antigen presentation. Cryostat sections were incubated with 0.5% Triton™ X-100 (Sigma-Aldrich, Saint Louis, United States) in PBS for 30 min at room temperature to improve antibody penetration. Unspecific protein binding sites were blocked with 5% skim milk in PBS for 30 min at room temperature. Primary antibodies (Supplementary Table S1) were diluted in milk and incubated overnight at 4 °C. Bound antibodies were detected with Cy2-or Cy3-labeled secondary antibodies (Jackson Laboratories, Bar Harbor, United States). Image acquisition was performed with a Zeiss LSM5 Exciter confocal microscope and ZEN imaging software (Zeiss, Jena, Germany).
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7

Immunocytochemistry for S100 Protein

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Cultures were fixed with 4% PFA for 30 min. Fixed cells were rinsed and blocked for 30 min in PBS containing 0.1% Triton X-100 and 2% FCS (PBS-TS). Cells were incubated with S100 pAb (1∶600, Dako) in PBS-TS for 2 hr at room temperature (RT), washed with PBS, and incubated with a Cy2- or Cy3-labeled secondary antibody (1∶400; Jackson) in PBS-TS for 2 hr at RT. Nuclei were labeled with Hoechst 33258 (Invitrogen; 1∶1000). Coverslips were washed and mounted in Mowiol. Images were captured by fluorescence microscopy.
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8

Comprehensive Immunostaining Techniques

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Transmission electron microscopy was performed as previously described (36 (link)). Hematoxylin & eosin staining was carried out as described (37 (link)). For immunostaining, embryos or tissues were fixed with 4% paraformaldehyde overnight at 4°C and then rinsed with PBS 3 times. The samples were dehydrated in an increasing gradient of 10% to 30% sucrose/PBS and embedded in OCT (Tissue Tek). The samples were cryosectioned at 10-μm thickness, and OCT was washed out by PBS. The sections were incubated with diluted primary antibody overnight at 4°C and then with cy2- or cy3-labeled secondary antibody (Jackson Immunoresearch) for 1 hour at room temperature with PBS wash 3 times in between. The following antibodies were used for immunostaining: rabbit-anti-Numb (Cell Signaling, 2756s, 1:200 dilution), mouse anti-α-Actinin (Sigma, A7811, 1:500 dilution), mouse anti-α-Actin (Sigma, A9357, 1:500 dilution), goat anti-NEBL (Abcam,ab99420, 1:100 dilution), mouse anti-α-Tubulin (Covance, MMS-407R, 1:800 dilution), mouse anti-Desmin (Covance, MMS-454s, 1:200 dilution), and Phalloidin (Invitrogen, A12379 1:500 dilution).
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