The largest database of trusted experimental protocols

Lsm 5 exciter

Manufactured by Zeiss
Sourced in Germany, United States

The LSM 5 Exciter is a laser scanning microscope system designed for high-resolution imaging and analysis. It features a compact and modular design, providing flexibility for a wide range of applications. The core function of the LSM 5 Exciter is to enable users to capture detailed, high-quality images of samples using laser-based scanning technology.

Automatically generated - may contain errors

123 protocols using lsm 5 exciter

1

Multimodal Brain and Pancreas Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
For imaging the structures of brain and pancreas, the clarified brain and pancreas were incubated in FocusClear, a water-based immersion medium, for 4 days. The brain and pancreas were then enclosed between two coverglass-bottom petri dishes. The brain and pancreas were imaged (Z-stack volume, 110–650 μm) using confocal laser scanning microscopy (LSM 5 EXCITER; Carl Zeiss, Jena, Germany) at excitation wavelengths of 488 nm with a C-Apochromat × 40 objective (1.2 numerical aperture). Three-dimensional reconstruction was generated using LSM5 EXCITER software (Carl Zeiss). To extract the pancreatic microvasculature images, we carefully traced the anti-α-smooth muscle actin profiles using the ImageJ plug-in Single Neurite Tracer [7 ].
+ Open protocol
+ Expand
2

Visualizing Complex Tissue Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Specimens were visualized either by conventional confocal or light sheet microscopy. For standard confocal imaging, samples were positioned in a glass bottom petri dish (Fluoro Dish, World Precision Instruments) submerged in a drop of 80% (v/v) glycerol in H2O to minimize shifting and moving of the specimen during image acquisition. Human gut samples were mounted as described in Supplementary Figure 2. Image stacks were recorded on a LSM 5 Exciter attached to an AxioImager (Carl Zeiss, Microscopy GmbH, Jena, Germany) with a Plan-Neofluar 10x/0.3 objective or Acroplan 20x/0.4 Corr. For imaging on a light sheet microscope (Lightsheet Z.1, Carl Zeiss, Microscopy GmbH, Jena, Germany), samples were glued to a hook-shaped holder, submerged in 80% (v/v) glycerol in H2O, and evaluated with an EC Plan-Neofluar, 5x/0.16 objective, and a Clr Plan-Neofluar 20x/1.0 Corr nd = 1.45 objective.
Images were processed and 3D-reconstructions were rendered using ZEN software (Carl Zeiss).
+ Open protocol
+ Expand
3

Cellular Uptake of Fluorescent Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cellular uptake of SP3NPs was determined by confocal microscopy and flow cytometry using the intrinsic fluorescence of cypate. B16F10 cells were cultured in DMEM supplemented with 10% FBS, 100 units ml-1 penicillin, and 100 μg ml-1 streptomycin. B16F10 cells were seeded onto cover glasses at a density of 1 × 105 cells per well in 24-well plates. After reaching 70% confluence, cells were treated with free cypate or SP3NPs at an equivalent dose of cypate. After incubation for 1 h, cells were washed with cold PBS, fixed with 4% paraformaldehyde for 15 min, and stained with DAPI. Cellular fluorescence was observed using a confocal laser-scanning microscope (LSM 5 Exciter; Carl Zeiss, Inc., Jena, Germany). Flow cytometry measurements were conducted by first harvesting cells and washing them three times with cold PBS containing 2% FBS. Cells were then analyzed using a BD FACSCalibur flow cytometer using Cell Quest Pro software (BD Biosciences, San Jose, CA).
+ Open protocol
+ Expand
4

NF-κB Activation Imaging in LPS-Stimulated HT-29 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HT-29 cells were seeded onto round coverslips and pretreated with GS extract (100 mg/mL) or probiotic bacteria (109 CFU/mL) for 2 h followed by a PBS wash to remove the unbound bacteria. Cultured HT-29 cells were stimulated by 1 μg/mL of LPS. After 24 h incubation, HT-29 cells were fixed in 4% (w/v) formaldehyde in phosphate-buffered saline (PBS) for 30 min. The cell were permeabilized with 0.2% (w/v) Triton X-100 in PBS for 20 min. And then cells were washed three times with PBS and shaken while incubated with blocking solution (3% bovine serum albumin in PBS) for 1 h at room temperature. The cells were next incubated with primary antibodies to NF-κB p65 (Santa Cruz Biotechnology, 1:200) for 24 h, followed by three PBS washes to remove unbound primary antibody. This was followed by incubation with Alexa fluor 592 conjugated anti-rabbit IgG for 1 h at room temperature, and subsequent staining with 100 ng/mL DAPI in PBS for 30 min. Finally, confocal images were obtained using a LSM5 EXCITER (carl-Zeiss, Germany).
+ Open protocol
+ Expand
5

Subcellular Localization and Characterization of Stevia Terpene Synthases

Check if the same lab product or an alternative is used in the 5 most similar protocols
Plasmids harboring SrTPS1-YFP, SrTPS2-YFP, SrTPS3-YFP, SrTPS4-YFP, and SrTPS5-YFP constructs were transformed into Agrobacterium tumefaciens GV3101 strain by electroporation and grown on Luria Bertani (LB) plates containing 20 mg/L of rifampicin and 25 mg/L of spectinomycin.
Cultures obtained from the above transformation were infiltrated into 4-week-old N. benthamiana leaves using a needleless 1 mL syringe. The agro-infiltrated plants were maintained in long-day conditions (16 h light/8 h dark, 25 °C).
For subcellular localization, infiltrated N. benthamiana leaves were mounted on slides three days post infiltration (dpi) and imaged using an LSM5 Exciter (Carl Zeiss, Oberkochen, Germany) confocal scanning laser microscope with a standard filter set. Images were processed using an LSM Image Browser (Carl Zeiss, Oberkochen, Germany).
For in vivo characterization of SrTPSs, VOCs were collected from N. benthamiana leaves 3 dpi, as described in the extraction of essential oils from Stevia tissues.
+ Open protocol
+ Expand
6

FISH Analysis of hBMSCs for HIF1A-AS1

Check if the same lab product or an alternative is used in the 5 most similar protocols
FISH analysis of cultured hBMSCs on sterile glass coverslips was performed with a fluorescence in situ hybridization kit (RiboBio, Guangzhou, China). After preprocessing the sample as described previously,22 (link) hybridization with oligodeoxynucleotide probes for HIF1A-AS1, U6, or 18S was performed overnight at 37 °C while protected from light. The next day, the hBMSCs were counterstained with DAPI. Finally, images were obtained with an LSM 5 EXCITER confocal imaging system (Carl Zeiss, Oberkochen, Germany).
+ Open protocol
+ Expand
7

Visualizing Germ Cell Nuclei in Nematodes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult hermaphrodites and adult males propagated on 1/10 MEA-chloramphenicol plates were picked up and transferred into a droplet of 0.1 M NaCl in the well of an eight-well glass slide25 (link). The worms were cut near the anterior region with a razor blade to release the gonad. The 0.1 M NaCl was completely exchanged for −20 °C methanol by pipetting, the nematode was then incubated for 5 min, and then stained with 2 µg/mL of DAPI in phosphate-buffered saline (PBS) for 10 min. After washing twice with PBS, the worms were mounted with Vectashield onto glass slides (Vector Laboratories Inc., USA). DAPI-stained images were obtained with a confocal laser-scanning microscope (LSM5 exciter, Carl Zeiss).
+ Open protocol
+ Expand
8

Immunofluorescence Imaging of Liver Macrophages

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissues were cryo-sectioned and processed for the immunofluorescence (IF) assay as described previously (Alam et al., 2012 (link)). RBC-EM DiD or PBS-injected mouse liver sections were stained with anti-rabbit CD68 (Abcam), followed by staining with goat anti-rabbit FITC (Abcam). Tissue sections were mounted using the VECTASHIELD mounting medium (Vector Laboratories, Burlingame, CA, United States). IF-stained sections were imaged under a confocal microscope (LSM 5 Exciter, Zeiss, Oberkochen, Germany). Total of six fields were counted by observers. Number of CD68 positive (CD68 +; green) cells were counted from RBC-EM DiD or PBS-injected mouse liver sections. Then the number of DiD positive (DiD +; red) with CD68 + or CD68 - cells were counted.
+ Open protocol
+ Expand
9

Immunofluorescence Analysis of Tight Junctions

Check if the same lab product or an alternative is used in the 5 most similar protocols
HK-2 cells were grown to confluence in transwell chambers (0.4-μm pore size, Transwell Permeable Supports, Cat No. 3460, Corning) for 3 days. On day 4, HK-2 cells were treated with vehicle or 10, 25, 50 or 100 nM siRNA for 72 h and fixed with 4% paraformaldehyde in PBS, pH 7.4 for 20 min at room temperature. After fixation, cells were washed twice in PBS and permeabilized with 0.3% Triton X-100 in PBS at room temperature for 15 min. Cells were washed and labeled with anti-claudin-2, anti-occludin or anti-ZO-1. After incubation, cells were washed in PBS and incubated with goat anti-rabbit IgG Alexa Fluor 488 secondary antibody (A11008, Molecular Probes) or donkey anti-mouse IgG Alexa Fluor 488 secondary antibody (A21202, Molecular Probes) for 2 h at room temperature. Immunolocalization used a laser scanning confocal microscope (Zeiss LSM 5 EXCITER, Jena, Germany) [11 (link)].
+ Open protocol
+ Expand
10

Cloning and Expression of Terpenoid Synthases

Check if the same lab product or an alternative is used in the 5 most similar protocols
Full-length ORFs of CsTPS3GT, CsTPS4WS, and CsTPS5TH were cloned into pENTR vectors using the pENTR™/D-TOPO® Cloning Kit (Thermo Fisher Scientific, Singapore) and transformed into XL1-blue competent cells. Plasmids from the positive clones were isolated and cloned into the destination vector pBA-DC-YFP [71 (link)], which contains the YFP in frame at the C-terminal and cauliflower mosaic virus (CaMV) 35S promoter, to generate CsTPS3GT-YFP, CsTPS4WS-YFP, and CsTPS5TT-YFP, respectively. The constructs were transformed into the Agrobacterium tumefaciens EHA105 strain by a heat shock method [72 (link)]. The transformed EHA105 cells were cultured at 28 °C and resuspended in a solution containing 100 µM acetosyringone, 10 mM MES (pH 5.6), and 10 mM MgCl2. The above mixture was incubated at room temperature for 3 h and later infiltrated into N. benthamiana leaves using a 1 mL syringe. After 2 d, the infiltrated leaves were excised, and the fluorescence signals were observed under a confocal scanning laser microscope (LSM 5 Exciter, ZEISS, Jena, Germany). All constructs were verified by DNA sequencing.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!