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67 protocols using masson s trichrome staining

1

Breast Cancer Biomarker Assessment Protocol

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Assessment of breast cancer biomarkers, including estrogen receptor (ER), progesterone receptor (PgR), human epidermal growth factor receptor type 2 (HER2), and Ki67 labeling index, was prospectively performed for each patient to guide treatment strategy.21 (link) Immunohistochemical staining was done as previously described.22 (link) Briefly, ER and PgR status were considered positive when there was ≥1% of nuclear staining. HER2 positivity was indicated by 3+ immunohistochemical staining or fluorescence in situ hybridization with a threshold ratio of >2.2.23 (link) Ki67 labeling index was determined by counting at least 500 tumor cells in hot spots. Masson's trichrome staining was performed according to the manufacture's recommended protocol (Sigma–Aldrich, St Lois, MO).
Tumor size was generally assessed based on the pathologically invasive area in the surgical specimen; in patients who received any neoadjuvant therapy, tumor size was assessed by pretreatment magnetic resonance imaging or sonography. Evaluation of axillary lymph node metastasis was pathologically performed and classified according to pTNM staging system (UICC, Seventh Edition, 2009). The pathologists in Kumamoto University Hospital assessed Nuclear Grade based on Atypia score and Mitotic index.
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2

Histological Assessment of Myocardial Fibrosis

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Heart tissues were fixed in 10% neutral buffered formalin for 72 h at room temperature. Histopathological analysis was performed on paraffin-embedded sections of the heart (5 µm) stained with hematoxylin and eosin staining. Briefly, after dewaxing and hydration of paraffin sections, hematoxylin staining was performed for 3 min at room temperature, the sections rinsed with distilled water, and then stained with eosin for 2 min at room temperature and rinsed with distilled water again. Finally, the sections were dried and sealed. Myocardial fibrosis was determined using Masson's trichrome staining (Sigma-Aldrich; Merck KGaA). Briefly, hematoxylin staining for 5 min, ponceau trichrome staining for 10 min and aniline blue staining for 2 min at room temperature. Finally, the sections were dried and sealed. Multiple images were acquired from each stained heart section under a light microscope. The fibrotic areas of paraffin-embedded heart sections were evaluated using ImageJ 6.0 software (National Institutes of Health).
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Histological Examination of Wound Tissue

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Wound tissues were collected and then fixed in 4% formaldehyde overnight at scheduled time points. All tissues were dehydrated in a graded series of ethanol, and embedded in paraffin. Tissues were sectioned into slices with a thickness of 5 μm and for routine haematoxylin-eosin (H&E, Sigma-Aldrich) staining, Masson’s trichrome staining (Sigma-Aldrich) and visualized by an optical microscope.
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4

Comprehensive Immunohistochemical Profiling

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Immunohistochemistry (IHC) staining was performed according to a previous method [13 (link), 20 ]. Serial paraffin sections were subjected to antigen retrieval, incubation in antigen retrieval solution for 20 min, inactivation with endogenous peroxidase (3% H2O2), and blocked in goat serum for 1 h. Sections were then incubated with primary antibodies against CD3 (SC-20047, Santa Cruz Biotechnology Inc., Dallas, TX, USA), F4/80 (SC-377009, Santa Cruz Biotechnology Inc.), IL-6 (GeneTex, Santa Cruz Biotechnology Inc.), IL-1β (ab9722, Abcam), TNF-α (ab183218, Abcam), p-p65 (Ser536) (#3033, Cell Signaling Technology), p16 (ab211542, Abcam), NLRC4 (ab201792, Abcam), ITGAM (ab133357, Abcam), p19 (ab80, Abcam), Collagen I (14695-1-AP, Proteintech), Collagen III (22734-1-AP, Proteintech), α-SMA (14395-1-AP, Proteintech), and β-galactosidase (15518-1-AP, Proteintech). After washing, sections were incubated with a secondary antibody for 1 h, and processed using the SABC-POD kit (SA2001, Boster, China). Then, sections were counterstained with Hematoxylin and fixed with biomount medium. Hematoxylin and Shandon Instant Eosin (Solarbio Co., Ltd.) were used to determine cell infiltration. Masson's trichrome staining (Sigma-Aldrich®) was used to assess collagen deposition.
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5

Automated Masson's Trichrome Stain Analysis

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Explanted tissue was fixed in 4% paraformaldehyde in PBS for 24 hours. For Masson’s trichrome staining, tissue was dehydrated in a graded ethanol series and embedded into paraffin. Tissue sections were deparaffinized and rehydrated through graded ethanol series. Masson’s trichrome staining (Sigma-Aldrich) was performed according to the manufacturer’s recommendations and imaged using bright-field microscopy. We then implemented an algorithm in MATLAB to automatically deconvolve the color information of each trichrome image (66 (link)). We determined a color matrix based on the stain-specific RGB light absorption of these samples C=[0.79951070.59140.10530.10000.73740.66800.59230.32640.7366]
The top two rows correspond to stain-specific RGB values of trichrome red and blue, respectively, and the columns represent the normalized vector values in the red, green, and blue channels. This algorithm allows for a robust and flexible method for objective immunohistochemical analysis of samples stained with up to three different colors.
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6

Myocardial Infarction Tissue Analysis

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After the echocardiography study at 3 weeks, animals were killed and hearts were harvested and frozen in OCT compound. Specimens were sectioned at 10 μm thickness from the apex to the ligation level with 100‐μm intervals. Masson's trichrome staining was performed as described by the manufacturer's instructions (Sigma‐Aldrich). From the Masson's trichrome‐stained images, morphometric parameters including viable myocardium and scar size were measured in each section with NIH ImageJ software. The percentage of viable myocardium as a fraction of the scar area (infarcted size) was quantified as described 14. Three selected sections were quantified for each animal.
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7

Histological Analysis of Heart Tissue

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Hearts were freshly collected, fixed in 4% paraformaldehyde diluted in PBS, dehydrated by ethanol, cleared in xylene, and embedded in paraffin wax. Serial sections (5 μm) were obtained and stained with hematoxylin and eosin (H&E) as previously described [35 (link)]. Masson’s Trichrome staining was performed according to the manufacturer’s protocol (Sigma).
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8

Histological Evaluation of Murine Organ Fibrosis

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Murine organ samples comprising spleen, skin, lung, kidney, heart, muscle and esophagus were fixed in 4% formalin overnight, embedded in paraffin, and used for preparing 3 µm–thick sections. To evaluate inflammatory and fibrotic features of the samples, paraffin sections were subjected to hematoxylin and eosin (H&E) staining (Roth, Germany) and Masson’s Trichrome staining (Sigma-Aldrich, USA), respectively. Scoring of inflammation was performed in blinded manner by two investigators. The inflammatory score was calculated based on affected area compared to total area of the tissue sample. The severity of lung fibrosis was scored according to the Ashcroft scoring system (16 (link)). For other organs, fibrosis was scored on a scale of 0 to 5: grade 0, no sign of fibrosis; grade 1, minimal fibrosis; grade 2, minimal to moderate fibrosis; grade 3, moderate fibrosis; grade 4, moderate to severe fibrosis; grade 5, severe fibrosis.
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9

Immunohistochemical Analysis of Fibrotic Tissue

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Immunocytochemistry, IHC, EdU, and TUNEL assays were performed as previously described (17 (link), 36 (link)), with additional detail in Supplemental Methods, including a list of antibodies in Supplemental Table 2. Fibrotic area was assessed by Masson’s trichrome staining (Sigma-Aldrich) following protocol described by the manufacturer, and the images were analyzed using ImageJ software (NIH).
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10

Histological Analysis of Skin Samples

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Skin tissue samples (approximately 8 mm × 8 mm) were cut from the treatment area immediately after the experiments on day 21 and stored in a 10% formalin solution. Hematoxylin and eosin (Sigma-Aldrich) and Masson’s trichrome staining (Sigma-Aldrich) were applied. The samples were then analyzed by an expert histologist.
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