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Er4119hs cavity

Manufactured by Bruker

The ER4119HS cavity is a high-sensitivity resonator designed for use in electron paramagnetic resonance (EPR) spectroscopy. It is a key component of the spectrometer, responsible for generating and detecting the electromagnetic signals that interact with the sample under study. The cavity provides a controlled environment for the sample and enhances the sensitivity of the EPR measurements.

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15 protocols using er4119hs cavity

1

ESR Spectroscopy for Nitroxide Probes

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For each X-band continuous-wave (cw-) ESR spectrum, ∼ 5 μL sample was loaded into a 0.6 mm i.d. × 0.8 mm o.d. glass capillary (Vitrocom, Inc., Mountain Lakes, NJ), sealed at one end. The spectra were acquired on a Bruker EMX spectrometer using a dielectric ER4119HS cavity, an incident microwave power of 2 mW, and a field modulation of 1 G at 100 kHz. The measured averaged ESR spectra were base-line corrected and normalized following previously described procedures.36 (link)The effective rotational correlation time, τR, of the nitroxide tethered to the DNP samples (in units of s) was estimated from the ESR line-shape as previously described:37 (link)where ΔH0 is the peak-to-peak linewidth of the central line in Gauss, and h(0) and h(−1) are the peak-to-peak amplitudes of the central and high field lines, respectively.
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2

Protein Sample CW-EPR Spectroscopy

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The CW-EPR technique was described previously.31 (link),45 (link) Briefly, 25µL sample was aspirated into a 50µL glass capillary and nested in a quartz capillary. The following ligands were used: MolA at 2x molar excess over MolBC; 10mM ATP + 1.5mM EDTA; and 16.5mM MgCl2. Ligands were serially added to recovered protein samples, then incubated for at least 10min (60 min for MolA) before being re-scanned. X-band EPR spectra were collected at room temperature (296K) with a Bruker EMX-plus spectrometer with an ER 4119HS cavity, signal averaged 20 times in liposomes and 9 times in detergent. The scan width was set to 300Gauss and clipped to the values described in the figure legends. Distances were calculated using the Short Distances simulation software written by C. Altenbach.37 (link)
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3

Quantitative EPR Analysis of Radical Species

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Electron paramagnetic resonance (EPR) spectra were recorded on a Bruker EMXplus (X-band) spectrometer equipped with an ER 4119HS cavity. The (composite) spectra were fitted and the radical concentration was determined using the quantitative EPR package of the Bruker Xenon software. The full procedure to determine thermodynamic data can be found in the ESI. To generate the radicals, 5% (v/v) di-tert-butyl peroxide was added to the solutions in benzene (with or without 10% v/v t-BuOH) under nitrogen and the EPR cavity irradiated with a Hamamatsu LC5 Hg–Xe lamp (150 W) via a 3.5 mm quartz light guide. REqEPR experiments with sulfonyl radicals were performed under continuous irradiation.
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4

Spectroscopic Characterization of Azaphenoxazines and Azaphenothiazines

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Azaphenoxazines and azaphenothiazines were synthesized according to literature procedures with slight modifications (see ESI). UV-visible spectra were measured with a Cary 100 spectrophotometer equipped with a thermostated 6 × 6 multicell holder. Fluorescence spectra were measured with a BioTek Synergy H1 Hybrid Multi-mode reader. Electron paramagnetic resonance (EPR) spectra were recorded on a Bruker EMXplus (X-band) spectrometer equipped with an ER 4119HS cavity. The radical concentration was determined using the quantitative EPR package of the Bruker Xenon software.
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5

CW-EPR Spectroscopy of Membrane Lipids

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CW-EPR spectra at
the X band (9.44 GHz) were obtained with a Bruker EMX spectrometer
using a high-sensitivity ER4119HS cavity. The microwave power was
13.4 mW, the modulation frequency was 100 kHz, and the modulation
amplitude was 1 G. The averaging number of scans was 20 for the temperature
range of the gel phase and 5 for the temperature range of the fluid
phase. A Bruker BVT-200 variable temperature device was used to control
the sample temperatures. Experiments were performed at least twice,
with samples prepared on different occasions. Empirical data correspond
to the means of experiments with different samples, and standard deviations
of these samples are shown as error bars.
The values of the
maximum (Amax) and minimum (Amin) hyperfine splittings, as well as those of the low
(h+1), central (h0), and high (h–1) field
line amplitudes were measured directly from spectra (see Figures 3 and 5).
The effective order parameter, Seff, was calculated from the expression27 (link) where , , A// (= Amax) is the maximum hyperfine splitting directly
measured in the spectrum, , Amin is the
measured inner hyperfine splitting (see Figure 5), and Axx, Ayy, and Azz are the principal values
of the hyperfine tensor for doxylpropane.28 (link) Each experiment was performed at least two times. Error values account
for standard deviations and are presented as error bars when larger
than the symbols.
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6

Quantitative EPR Spectroscopy Protocol

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Electron paramagnetic resonance (EPR) spectra were recorded using a Bruker EMXplus (X-band) spectrometer equipped with an ER 4119HS cavity at 20 °C. The samples were 0.1–10 mM in benzene and degassed (3 cycles of freeze–pump–thaw) and placed under an atmosphere of N2 prior to acquisition. The radical concentration was determined using the quantitative EPR package of the Bruker Xenon software. Spectral simulations were performed using EasySpin.43 (link)
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7

EPR Spectroscopy of Spin-Labeled Samples

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Spin-labeled samples (10–50uM) were transferred to round glass capillary tubes (0.6 mm ID, 0.8 mm OD; Vitrocom, Inc.) for measurement. The continuous-wave EPR (cw-EPR) spectra were measured utilizing a Bruker EMX spectrometer housing an ER4119HS cavity. For spectral acquisition, the incident microwave power was 2 mW, and the field modulation was 2 G at a frequency of 100 kHz. Each spectrum was acquired with 512 points, corresponding to a spectral range of 100 G, then corrected for background baseline, and intensity normalized following reported protocols (54 (link)).
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8

ESR Spectroscopy of Lipid Dispersions

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ESR measurements at X-band (9.44 GHz) were performed with a Bruker EMX spectrometer, with a high sensitivity ER4119HS cavity. Lipid dispersions at a final lipid concentration of 5 mM in buffer PBS were placed in flame sealed capillary tubes. Field-modulation amplitude in the range of 1.0—2.0 G (depending on the line widths), sweep width of 100 G and microwave power of 13 mW were used. The temperature was controlled to about 0.1 °C with a Bruker BVT-2000 variable temperature device from 20 °C up to 70 °C, and monitored with a Fluke 51 K/J thermometer with a probe placed just above the cavity.
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9

X-Band EPR Spectrum Acquisition

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CW-EPR spectra were collected at X-band (~9.34 GHz) with a Bruker EMX spectrometer equipped with an ER041xG microwave bridge and an ER4119-HS cavity at the Ohio Advanced EPR Laboratory at Miami University. Each spectrum was acquired by signal-averaging 10 scans with 3315 G central field, sweep width 150 G, 42 s field sweep, 100 kHz modulation frequency, 1 G modulation amplitude, and 10 mW microwave power.37 (link) Each experiment was repeated at least three times at room temperature.
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10

EPR Spectroscopy Analysis of Spin Systems

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EPR spectra were
recorded with an
X-band Bruker EMX spectrometer equipped with an ER 4119HS cavity.
The Bruker Win-EPR software suite version 3.0 was used. Variable-temperature
experiments were performed with an Oxford (ESR900) helium cryostat
(temperature range 4–8 K). All spectra were recorded at 9.37
GHz with a microwave power of 1 mW, a modulation amplitude of 2 G,
and a modulation frequency of 100 kHz at 4 K. For the power sweep
data, the power was varied from 0.02 mW to 20 mW, and the temperature
was set to 5 and 8 K for Av1 and Cp1, respectively. Simulations were
performed with the EasySpin software suite (Supplementary Figure 1).43 (link) For all simulations,
the S = 3/2 real spin system (axial g-tensor) and S = 1/2 effective spin system (rhombic g-tensor) were matched to the experimental spectra. From
the S = 3/2 model, the E/D ratio was determined. From the S = 1/2
model, the effective g values were determined. For
spectra exhibiting two spin systems, simulations were calculated by
combining two spin systems with their own E/D ratios and g values. The relative weight
of the spin systems and line widths were varied by inspection. All
parameters for the simulations are provided in Supplementary Table 1.
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