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23 protocols using chemerin

1

Quantifying Chemerin Internalization in Cells

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Cells were incubated in DMEM, containing 4 mM HEPES and 1% BSA, in the presence or in the absence of 1 nM of chemerin (R&D) or CCL19 (Peprotech, Rocky Hill, NJ, USA) for the indicated times. Where indicated, cells were preincubated with 80 µm Dynasore (dynamin inhibitor, Sigma, St. Louis, MO, USA). After incubation, residual ligand in the supernatant was quantified by ELISA (DY2324 and DY361, R&D).
To evaluate chemerin into the cells, cells were incubated as previously described, in the absence or in the presence of 1 nM chemerin at 37°C for 2 h. Then plates were put in ice and rinsed with PBS. Cells were washed with different buffers for 5 min at room temperature: PBS, acidic buffer [150 mM NaCl, 100 mM glycine, pH = 3, in water (32 (link))], or acidic followed by high salt buffer (2 M NaCl in water). After rinsing with PBS, cells were lysed for 30 min in ice (1% Triton X-100, 5 mM EDTA, in PBS), then centrifuged (16,000g) at 4°C for 15 min. Internalized chemerin was evaluated by ELISA from supernatants obtained after centrifugation. The quantity of chemerin was normalized over total protein content, quantified using Bradford reagent (Biorad, Hercules, CA, USA).
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2

Secretomic and SILAC Analysis of Chemerin Targets

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The secretome of esophageal myofibroblasts was studied after iTRAQ labelling of proteins in media followed by LC-MS/MS as previously described (see Methods S1) [3] (link). Putative chemerin targets in MSCs were sought after SILAC labelling of cells followed by exposure to chemerin (R&D Systems, Abindgon, Oxfordshire, UK) for 24 h and processing of cells for LC-MS/MS (see Methods S1) as previously described [23] (link).
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3

Characterizing MSC Migration Dynamics

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Transwell migration assays were performed using BD inserts (BD Bioscience, California) as previous described [25] employing chemerin (R&D Systems), chemerin-9 (Piscataway, NJ) or undiluted CM in the lower well. The effects were studied of phorbol 12-myristate 13-acetate (PMA), Ro320432, SB202190, SP600125, U0126, ISO-1 (Calbiochem, Darmstadt, Germany), LY294002 (New England labs, Hertfordshire, UK), chemerin neutralising antibody (MAb2325, R&D Systems), CCX-832 and CCX826 (ChemoCentryx, Mountain View, CA) [26] (link). Scratch wound migration assays were performed as previously described [27] . Transendothelial migration assays were performed using MSCs labelled with 1 µM PKH67 (Sigma Aldrich, Dorset, UK) according to the manufacturer's instructions and BD BioCoat Matrigel Invasion Chambers (BD Bioscience) coated with a monolayer of HUVECs 48 h previously. Migrating MSCs were subsequently counted as fluorescent cells.
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4

Chemerin and Growth Factor Stimulation

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Cells (106) were plated in 10cm dishes, incubated overnight, then washed 3 times with 10ml sterile PBS, and incubated in 5ml serum-free media (SFM) for 1 h followed, unless otherwise stated, by stimulation for 30 min with 100ng.ml-1 chemerin (R&D Systems Inc., Oxfordshire, UK), 100ng.ml-1 recombinant human GF-II, 50ng.ml-1 IGF-I (R&D Systems Inc.) or 1μM ionomycin (Sigma-Aldrich, Poole, UK). In some experiments cells were preincubated for 30 min with 10μg.ml-1 brefeldin A (Epicentre Biotechnologies, Cambio Ltd, Cambridge, UK), 10μg.ml-1 cycloheximide (Sigma-Aldrich), 3.2μM AG1024 (Calbiochem) or 1μM CCX832 (ChemoCentryx, Mountain View, CA). After stimulation, medium was centrifuged (800g 4°C, 7 min) and stored at -80°C.
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5

Chemical Reagents Sourcing for Research

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All chemicals were obtained from Sigma except; bicuculline (Tocris), TMR-SP (Enzo Life Sciences), Alexa Fluor 488 hydrazide (Molecular Probes), chemerin (R&D Systems), QX-314-Cl and TTX (Alomone Labs).
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6

Adiponectin, DPP4, and Chemerin ELISA

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Commercial ELISA kits from Mercodia (adiponectin, catalog no. 10–1193–01) and RD Systems (DPP4, catalog no. DY1180, and chemerin, catalog no. DY1180) were used.
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7

Macrophage Polarization with Chemerin

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The exudate was collected by washing the peritoneal cavity of mice with 2×5 ml of cold PBS. The harvested cells were then seeded in 48-well tissue culture plates with 4×105 cells per well and allowed to adhere for 6 h. The non-adherent cells were removed. The purity of the adherent macrophage population was evaluated by flow cytometry (the purity of isolated macrophages varied between 97% and 99% in three separate experiments). For the polarization of M1 and M2 macrophages, lipopolysaccharide. (LPS, 20 ng/ml) or IL-4 (10 ng/ml) (PeproTech, Rocky Hill, NJ, USA) was added, respectively, in complete RPMI 1640 media for 24 h with or without chemerin (3 nM) (R&D Systems).
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8

Phosphorylation and Invasion Assays with QRFP

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For the phosphorylation analyses, both the PC3 and DU145 cell lines were treated with QRFP (Phoenix Peptides, Burlingame, CA, USA; 100 nM) for up to 60 min at the following time-points: 0 (no supplement), 5, 15, 30 and 60 min. For the cell invasion assays, cells were treated with QRFP for 8 h at 1, 10 and 100 nM. Epidermal growth factor (EGF; Sigma-Aldrich), at 50 ng/ml was also used as a positive control. For the same experiment, we used the PI3K inhibitor, LY294002 (Sigma-Aldrich), and the MAPK inhibitor, U0126 (Sigma-Aldrich), both at 10 mM, in the presence or absence of QRFP. For the effects of adipokines, the PC3 cells were treated with leptin (100 nM), adiponectin (10 nM), and chemerin (1 nM) (R&D Systems, Abingdon, UK) for 24 h prior to assessing the levels of QRFP and GP103 by RT-qPCR. The same concentrations of LY294002 and U0126 were used.
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9

CMKLR1 Internalization Dynamics in Macrophages

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Internalization of CMKLR1 upon activation by chemerin was measured by flow cytometry using pro-inflammatory macrophages from WT (control), Grk6−/−, and Barr2−/− mice. Cells were aliquoted (2.5 × 105 cells/ tube), starved for 1 hour in serum-free RPMI 1640, and then stimulated with either 6.25 nM or 200 nM chemerin (R&D systems) for 30 sec, 1 min, 5 min, and 10 min at 37 °C + 5 % CO2. Cells were not stimulated at the 0 minute time point in order to determine maximum receptor expression before addition of ligand. At each time point, receptor internalization was arrested with 4°C buffer (HBSS + 5% FBS + 2 mM EDTA) and by placing cells immediately on ice. Cells were then stained for CMKLR1 (anti-mouse CMKLR1 PE, eBioscience, 12-7582, clone BZ194, discontinued, or anti-mouse CMKLR1, Miltenyi, 130-106-902, clone REA461) and F4/80 (rat anti-mouse F4/80:APC, AbC serotec, MCA497APCT, clone CI:A3-1) as previously described (51 (link)). CMKLR1 surface expression was measured via flow cytometry by gating on F4/80 positive cells to confirm the myeloid lineage and measuring mean fluorescence intensity (MFI) of CMKLR1. Data was normalized as a percent relative to the MFI at 0 min for each cell type.
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10

Chemerin-Induced Cell Migration Assay

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Cell migration to chemerin was examined using the Falcon HTS FluoroBlok 96-Multiwell Insert System (3 µm pore-size) (BD Biosciences, Bedford, MA) and pro-inflammatory macrophages from WT (control), Grk6−/−, and Barr2−/− mice obtained as previously described. Cells were starved in RPMI 1640 + 1% BSA at 37°C for one hour and labeled with calcein (485 nm/ 527 nm). Cells were washed and suspended in RPMI 1640 + 1% BSA + 10 mM HEPES, and 1 × 105 cells were loaded into FalconTM HTS FluoroBlok 96-Multiwell Insert System chemotaxis chambers (Corning, NY). Cells were allowed to migrate to RPMI/BSA/HEPES medium alone or to medium with addition of 6.25 nM chemerin (R&D Systems, Minneapolis, MN). Fluorescence was measured at 2 minute intervals over the course of 100 minutes at 37°C using a Fluoroskan Ascent Microplate Fluorometer (Thermo Scientific, Waltham, MA). Data was normalized by subtracting time 0 from each subsequent time point for each condition and graphed as fluorescence vs time for the first 100 minute interval. Analysis was done using linear mixed models and tested for a significant group effect using likelihood ratio test.
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