The largest database of trusted experimental protocols

14 protocols using cd133

1

Immunohistochemical analysis of CXCR4 and CD133

Check if the same lab product or an alternative is used in the 5 most similar protocols
EC patient tissue samples were obtained, fixed in 4% paraformaldehyde, and embedded into paraffin for sectioning with a microtome. The specimens were incubated with primary antibodies against CXCR4 (1:500, Abcam, UK), CD133 (1:100, Novus Biologicals USA) over night. The sections were treated with biotinylated anti-rabbit IgG antibody (Nichirei biosciences, Japan). Color developing agent was obtained by treatment with DAB kit (Nichirei biosciences, Japan). The samples were examined using a Leica microscope (Leica DMRBE, Germany).
+ Open protocol
+ Expand
2

Immunohistochemical Assessment of Tumor Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical staining was performed as previously described41 (link). Tumor specimens were removed, placed in 4% paraformaldehyde, and sliced into 5 mm thick sections. Sections were incubated with primary antibodies against Nanog (1:100, Abcam), POSTN (1:100, Abcam), CD133 (1:50, Novus), EpCAM (1:100, Abcam) overnight followed by EnVisionTM two-step Visualization System (GeneTech, Shanghai, China). Finally, slides were counterstained with Mayer’s hematoxylin and covered with coverslips. Photographs under a light microscope under ×200 magnification at 5 random fields were randomly captured with identical parameters.
+ Open protocol
+ Expand
3

Isolation and Characterization of Porcine Kidney Stem/Progenitor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
As previously described (11 (link), 12 (link), 15 (link)), STCs were isolated from cortical and medullary regions of the pig kidneys. Following washing (5mL of phosphate-buffered saline), kidney sections were diced and digested (2mg/mL of collagenase for 1hr). The fibrous portion of the kidney tissue was eliminated using a 60-mesh steel filter (250 m), and the processed samples were put through a 100 m cell filter (21 (link)). At 37°C and 5% CO2, STCs were grown in Medium 199 with 3% FBS from Gibco BRL (Waltham, MA) (22 (link)). Non-adherent cells were eliminated by changing the culture medium (Medium 199 with 3% FBS) every 48 hours. Adherent cells were trypsinized (TrypLETM Express Gibco BRL, Waltham, MA) and subcultured two weeks later. Cultured STCs were then characterized using flow cytometry and immunofluorescence staining, which confirmed co-expression of CD24 (Abcam, San Francisco, CA) and CD133 (Novus Biologicals, Centennial, CO) (11 (link)) and lack of expression of the myeloid marker CD163 (Abcam) or the glomerular epithelial cell marker plasmalemmal vesicle-associated protein (PLVAP, Abcam).
+ Open protocol
+ Expand
4

Isolation and Characterization of Porcine Stem/Progenitor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
STCs were isolated from fresh pig kidneys, as previously shown [7 (link),12 (link)]. Briefly, pig cortical and medullary sections were washed with phosphate-buffered saline, diced, and digested with 2 mg/mL collagenase for 1 h. Samples were then forced through a 60-mesh (250 μm) steel sieve to remove the fibrous component [34 (link)]. The cellular fraction was passed through 100 μm cell strainer followed by the addition of Medium 199 containing 3% FBS (Gibco BRL, Waltham, MA, USA) [35 (link)] at 37 °C in a humidified atmosphere with 5% CO2. The culture medium was replaced every 2 days to remove non-adherent cells. Two weeks later, the adherent cells were harvested with TrypLE™ Express (Gibco) treatment and sub-cultured. Cultured pig STCs were characterized using flow cytometry and immunofluorescence staining, which confirmed their positivity for CD133 (Novus Biologicals, Centennial, CO, USA) and CD24 (Abcam, San Francisco, CA, USA).
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of Tumor Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human skin tumor tissue microarrays were purchased from US Biomax (SK801b; Rockville, MD, USA). Paraffin-embedded human and mouse tumor tissue sections were blocked for 60 min with 2% normal horse or goat serum diluted in PBS. The sections were then blotted and incubated with specific primary antibodies in blocking serum for overnight at 4 °C. The next day, the slides were washed three times for 5 min each in PBS and incubated in biotinylated anti-mouse, rabbit, rat or goat antibody for 1 h. The slides were washed in PBS, followed by formation of the avidin-biotin-peroxidase complex (ABC, Vector Laboratories, Inc., Burlingame, CA, USA). The slides were washed, and the peroxidase reaction developed with diaminobenzidine and peroxide, then counterstained with hematoxylin, mounted in Cytoseal XYL (Thermo Fisher Scientific, Waltham, MA, USA), and evaluated using a light microscope (× 200, Olympus, Tokyo, Japan). Specific primary antibodies were purchased from Santa Cruz Bio (PCNA, F4/80 and p50; Dallas, TX, USA), eBioscience (Ly6G and CD11b; Thermo Fisher Scientific, Waltham, MA, USA), Abnova (CD133; Taipei, Taiwan), Novus Biologicals (TIMP-1; Littleton, CO, USA) and Abcam (IL-32, CD44, ITGAV and p65; Cambridge, MA, USA).
+ Open protocol
+ Expand
6

Isolation and Characterization of Porcine Kidney Tubular Epithelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For in vitro studies, pig proximal kidney TEC (LLC-PK1, ATCC, Manassas) were cultured in Medium-199 (Gibco BRL, USA) containing 3% FBS15 (link). STC-like cells were isolated from fresh pig kidneys (6 month old, normal diet) as previously described34 (link), with few modifications. Briefly, 3–5 g pig kidneys including both cortex and medulla were sectioned and washed with PBS. Kidneys were diced and digested with 2 mg/ml collagenase for 1 hour, then forced through a 60-mesh (250-μm) steel sieve to remove the fibrous component. The cellular fraction was then passed through 100 μm cell strainer and followed by the addition of Medium 199 containing 3% fetal bovine serum (Gibco BRL, USA) at 37 °C in a humidified atmosphere with 5% CO2. The culture medium was replaced every 2 days to remove non-adherent cells. After about two weeks, the adherent cells were harvested with 0.25% trypsin (Gibco BRL, USA) treatment and sub-cultured. Phenotypic analysis of cultured STC-like cells (as well as PK1 TEC) employed immunofluorescence for CD133 (Novus Biologicals), CD24 (Abcam), KIM1 (R&D Systems), Vimentin (Abcam), and OCT4 (Abcam).
+ Open protocol
+ Expand
7

Tracking STC-like Cells in Mouse RAS

Check if the same lab product or an alternative is used in the 5 most similar protocols
All protocols were approved by the Mayo Clinic Institutional Animal Care and Use Committee (protocol # A1609-16), all experiments were performed in accordance with relevant guidelines and regulations. STC-like cells acquired from domestic pig kidneys were used for the studies. Frozen kidney sections from 2 pigs (6 month old, normal diet) were used for double-staining of CD133 (1:100, Novus Biologicals) and CD24 (1:100, Abcam) to detect resident STC-like cells, and phaseolus vulgaris erythroagglutinin (PHA-E, Invitrogen) as a proximal tubular marker.
Male 129-S1 mice (Jackson Lab, ME, 11 weeks of age) were studied for 4 weeks, randomly divided into Sham (n = 8), RAS + Vehicle (n = 10), and RAS + STC-like cells-EV (n = 10) groups. RAS was induced by surgical placement of a 0.15 mm diameter arterial cuff, whereas sham surgeries without placement of a cuff were performed in the control group, as previously described33 . After 2 weeks the carotid artery was cannulated via a vascular cut down, and 200 uL PBS or STC-like cells-EV (30 ug in 200 uL PBS) slowly injected caudally. In some mice, the STK was obtained from Mito-Tracker or CM-Dil labeled EV-treated mice for EV tracking 2 weeks after injection (n = 4 each group). All remaining mice were scanned with MRI, 2 weeks after injection, and subsequently euthanized with CO2. Kidneys and blood samples were collected for ex-vivo studies.
+ Open protocol
+ Expand
8

Quantifying Stem Cell Populations in Pig Kidneys

Check if the same lab product or an alternative is used in the 5 most similar protocols
STC activation was assessed by counting the total number of STCs in pig kidney sections using flow cytometry (FlowSight, Amnis, Seattle, WA, USA) with CD133 (1:25, Novus Biologics, Centennial, CO, USA cat#: NB120-16518G) CD24 (1:25, Abcam, cat#: ab134375) antibodies [12 (link)]. At least 100,000 events were acquired. Following particle focusing, doublets, cell clusters, and debris were eliminated by gating on events with a high aspect ratio (>0.6) and for cell size (10–20 µm diameter, 100 to 400 µm2 area) using bright field area vs. aspect ratio features. CD133 and CD24 positive events were quantified using flow-gaiting strategy: number of double-positive CD133 and CD24 events/number of singlet events between 10–20 µm diameter and expressed as a percentage. To detect STCs in frozen pig kidney sections, we performed double-staining of CD133 (1:100, Novus Biologicals, Centennial, CO, USA) and CD24 (1:100, Abcam, San Francisco, CA, USA), and the tubular marker phaseolus vulgaris erythroagglutinin (PHA-E, Invitrogen, Carlsbad, CA, USA) [12 (link)].
+ Open protocol
+ Expand
9

Immunofluorescence Staining of CD133 and pSTAT5

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence staining were done as previously described33 (link). CD133 was purchased from Novus Biologicals (Littleton, CO, USA). pSTAT5 was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
+ Open protocol
+ Expand
10

Comprehensive Protein Analysis of IL-32γ Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Skin tissues from WT mice and IL-32γ mice were lysed by Pro-prep protein extraction buffer (iNtRON, Sungnam, Korea) and the total protein concentration was determined using the Bradford reagent (Bio-Rad, Hercules, CA, USA). Nuclear extraction was performed using nuclear extraction kit (Abcam, Cambridge, MA, USA). The membranes were immunoblotted with specific primary antibodies. The intensity of the bands was measured using the Fusion FX 7 image acquisition system (Vilber Lourmat, Eberhardzell, Germany). Specific primary antibodies were purchased from Santa Cruz Bio (p-IKKα/β, IKKα/β, p-JNK, JNK, p-ERK, p-p38, p38, p-STAT3, STAT3, p50, Histone H1, Cyclin D1, CDK4, Bax, Bcl-2, MMP-2, MMP-9 and β-actin; Dallas, TX, USA), Cell Signaling Technology (Myc-tag and ERK; Trask Lane, Danvers, MA, USA), Abnova (CD133; Taipei, Taiwan), Novus Biologicals (TIMP-1, iNOS and COX-2; Littleton, CO, USA) and Abcam (CD44, ITGAV, S100A8 and p65; Cambridge, MA, USA). β-actin and Histone H1 was used as a loading control.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!