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19 protocols using s camptothecin

1

Cellular Stress Induction and G-quadruplex Targeting

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Where indicated, cells underwent to following treatments: Cobalt Chloride (CoCl2; Sigma Aldrich) 100 μM for 16 h; Heparin (PharmaTex, Milan, Italy) 200 ng/ml for 16 h; Heparinase II from Flavobacterium heparinum (Sigma Aldrich) 15 mU/ml for 2 h; (S)-(+)-camptothecin 0.2 μM for 2 h (CPT, Sigma Aldrich); the ATM-inhibitor KU-55933 (Sigma-Aldrich) was used at 5 μM for 24 h. G-quadruplex ligands Emicoron (33 (link)) and RHPS4 (34 (link)), were used at 1 μM for 24 and 72 h, respectively. SULF2 inhibitor 2,4-disulfonylphenyl-tert-butylnitrone (OKN-007, R&D systems) was dissolved in water and used at 50 mg/kg once a day for 2 weeks.
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2

Protein-Ligand Binding Interactions Study

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Alternariol (AOH) was obtained from Cfm Oskar Tropitzsch (Marktredwitz, Germany). Racemic warfarin (WAR), naproxen (NAP), human serum albumin (HSA), bovine serum albumin (BSA), porcine serum albumin (PSA), rat serum albumin (RSA), glimepiride (GLIM), furosemide (FUR), bilirubin (BIL), phenylbutazone (PBut), indomethacin (IME), racemic ibuprofen (IBU) and S-camptothecin (CPT) were purchased from Sigma-Aldrich (Budapest, Hungary). Ethinylestradiol (EE) was purchased from Serva (Budapest, Hungary). Spectroscopic grade ethanol (96%), as well as HPLC-grade acetonitrile and methanol were obtained from VWR (Budapest, Hungary). Stock solutions of AOH (5000 μM), bilirubin (500 μM), methyl orange (2000 μM), and glimepiride (2000 μM) were prepared in spectroscopic grade dimethyl sulfoxide (DMSO; Fluka, Bucharest, Romania). Stock solutions of indomethacin and ethinylestradiol (both 2000 μM), as well as ibuprofen, furosemide, phenylbutazone, and naproxen (each 2500 μM) were prepared in ethanol (96%, spectroscopic grade). The applied amounts of organic solvents did not affect significantly the fluorescence measurements (tested in each spectroscopic model). All stock solutions were stored at −20 °C, and protected from light.
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3

Cytotoxicity Assay Reagents Protocol

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(S)-(+)-camptothecin (#C9911), Triton X-100 (#X100), paraformaldehyde (#P6148), potassium phosphate monobasic (#P5655), sodium phosphate dibasic (#S5136), and dimethyl sulfoxide (DMSO, #D8418) were purchased from Sigma-Aldrich (Prague, Czech Republic); staurosporine (#3510A) was purchased from Santa Cruz Biotechnology (Heidelberg, Germany); Hoechst 33342 (#17530) was purchased from AAT Bioquest (Sunnyvale, CA, USA); and fetal bovine serum (#16000–036) was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Hydrogen peroxide (30% solution, #23980–11000), potassium chloride (#60130G1000), sodium chloride (#71380G1000), isopropyl alcohol (#17510), nitric acid 65% (#18980) and sulfuric acid 96% (#20450) were obtained from Penta (Prague, Czech Republic).
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4

Synthesis of Dendrimer-Drug Conjugates

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EDA core PAMAM dendrimer G4.5 caboxylate sodium salt was purchased from Dendritech (Midland, MI). 2,2’-Bipyridine, 4-dimethylaminopyridine (DMAP), copper(II) sulfate (CuSO4), (+)-sodium L-ascorbate, 4-(4,6-dimethoxy-(1,3,5)triazin-2-yl)-4-methyl-morpholinium chloride (DMTMM), deuterated solvents, dichloromethane (DCM), dimethyl sulfoxide (DMSO), and other organic solvents were purchased from Acros (Morris Plains, NJ). (S)-(+)-Camptothecin (CPT), propargylamine (PPA), copper bromide (CuBr), N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC), trifluoroacetic acid (TFA) and silica gel 60 (40-63 μm, 230-400 mesh) were purchased from Sigma-Aldrich (St. Louis, MO). 1-Azido-3,6,9,12,15-pentaoxaoctadecan-18-oic acid (APO) and methoxypoly(ethylene glycol) amine (mPEG-NH2, 2000 g/mol) were purchased from Biomatrik (Jiaxing, Zhejiang, China) and JenKem Technology USA (Plano, TX), respectively. SnakeSkin dialysis tubing 3.5 kDa and 7 kDa MWCO, acetonitrile (ACN), HPLC grade water, phosphate-buffered saline (PBS), and magnesium sulfate (MgSO4) were purchased from Thermo Fisher Scientific (Pittsburg, PA).
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5

Versatile Live-Cell Imaging Assay

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Cells were seeded and transfected 24 h prior to live imaging in the presence of different siRNAs (30-50 nM) using RNAiMAX (Invitrogen). EGFP-PCNA transfection was performed 24 h prior to imaging using FugeneHD (Promega). The following inhibitors were used: olaparib (AZD2281, Ku-0059436; Selleckchem), veliparib (ABT-888; Selleckchem), talazoparib (BMN 673; Selleckchem); XAV-939 (Selleckchem), ME328 [34 (link)], verapamil (Sigma), MG132 (Sigma), hydroxyurea (Sigma), cisplatin (CPDD, Sigma), (S)-(+)-camptothecin (Sigma), etoposide (Sigma). SiR-Hoechst (Life Technologies) was used at the final concentration of 500 nM.
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6

Pharmacological Modulation of Hypoxia

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ATM inhibitor (KU-55933, Sigma-Aldrich) was treated both in zebrafish and cell cultures at 10 uM concentration. HIF activators (FG 4592, Stratech or JNJ-42041935, Johnson and Johnson) were treated at 15–50 uM and 100 uM respectively in zebrafish and in cell cultures. CPT ((S)-(+)-Camptothecin, Sigma Aldrich) was treated at 10–25 nM concentration in zebrafish and in cell cultures as indicated in the text.
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7

Nanoparticle-Based Camptothecin Delivery

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(S)-(+)-Camptothecin (CPT ≥ 90%), human holo-Transferrin (Tf, ≥98%), tetraethyl orthosilicate (TEOS, 98%), (3-aminopropyl)triethoxysilane (APTES, ≥98%), cetyltrimethylammonium chloride solution (CTAC, 25 wt.%), ammonium hydroxide solution (acs reagent, 28–30%), and glutaraldehyde solution (GLUT, 25 wt.%), were purchased from Sigma-Aldrich. Ethanol (EtOH, HPLC grade), dimethyl sulfoxide (DMSO, for analysis), and hydrochloric acid (HCl, ACS reagent, fuming, 37%) were obtained from Merck. All other reagents and solvents were of analytical grade. Deionized water (Milli-Q, 18.2 MΩ·cm) was used in all experiments. All materials were used without any further purification.
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8

Inhibitors and Reagents for Cell Studies

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MG132 was from Calbiochem. S-(+)-Camptothecin, cycloheximide, and naphthol AS-E were
from Sigma. LBL1 and LBL1-P were synthesized
as previously
described.29 (link),30 (link)
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9

Clonogenic Assay for Cytotoxicity

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Clonogenic assays were performed as reported previously [23 (link)]. Briefly, hydrogen peroxide, methyl viologen dichloride hydrate (paraquat) and (S)-(+)-camptothecin (all from Sigma) were applied to HeLa cells for 1 day, followed by recovery for 7 days in clastogen-free medium and then incubation with 0.05% crystal violet in 2% ethanol for 20 min. A colony was defined as that containing more than 50 cells visualized under a phase contrast microscope.
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10

Fission Yeast Stress Response Assays

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Schizosaccharomyces pombe strains used in this study are listed in Supplemental Table S1. Basic manipulations and MM media composition are described elsewhere (21 ). Hydroxyurea (Sigma-Aldrich) was used at 40 mM in YES (Bacto™ Yeast extract (BD) 0.5%, glucose 3%, leucine 200 mg/l, uracil 100 mg/l, adenine 200 mg/l and histidine 200 mg/l) and yeast were incubated for 4 h to elicit Cds1 activation. Bleomycin hydrochloride (Wako) was used at 5 μg/ml in YES and incubated 1 h to induce Chk1 activation. (S)-(+)-Camptothecin (Sigma-Aldrich) was used at 500 nM in SD (Difco™ Yeast Nitrogen Base w/o Amino Acids (BD) 0.67%, glucose 1% and appropriate nutrients) plates to exclude self-circularized chromosome survivors in the screen for stn1-1 suppressor strains.
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