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12 protocols using fak inhibitor 14

1

Modulation of hMSC Differentiation Pathways

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Rho was specifically inhibited using cell permeable C3 transferase (C3, Cytoskeleton, Denver, CO) and FAK was inhibited using FAK inhibitor 14 (SantaCruz Biotechnology, Dallas, Texas). Wnt/β-catenin was inhibited using cell-permeable FH535 63 (link), 64 (link) (SantaCruz Biotechnology, Dallas, Texas). hMSCs were seeded in a 8-well Labtek at a cell density of 8,000 cells per well and allowed to attach overnight (12 hours) in basal media, before media in the wells was replaced with serum-free media containing 0.5 μg/ml C3 transferase (C3) for 4 hours, or 1 μM FAK inhibitor 14 for 1 hour, or 15 μM FH353 for 1 hour. After pre-treatment, media was changed with induction media containing the inhibitor. Adipogenic media in AD conditions was cycled with 3 days induction followed by 1-day maintenance. Basal and osteogenic media was cycled every three days. Cell proliferation was analyzed 3 days post induction (time of descriptor analysis) using Alamar Blue assay using manufacturer’s protocol.
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2

Isolation and Culture of Mouse Hepatocytes

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Hepatocytes were isolated from wild-type, 6–12 week-old C57BL/6 mice (Jackson Laboratory, Bar Harbor, ME). In some experiments, hepatocytes were isolated from Hnf4afl/fl:Alb Cre+ mice that lacked HNF4α expression in adult hepatocytes and Hnf4afl/fl:Alb Cre wild-type littermates (kind gift from Dr. Frank J. Gonzalez) (17 (link)). All mice were cared for in accordance to the National Institutes of Health “Guide for the Care and Use of Laboratory Animals.” Hepatocyte isolation was performed by two-step perfusion using Liver Perfusion and Liver Digest Media (Life Technologies, Pleasanton, CA) followed by separation with 50% Percoll (GE Healthcare Life Sciences, Pittsburgh, PA) density gradient. Purity of live hepatocytes was routinely ≥90% by trypan blue exclusion. Hepatocytes were cultured in 5% fetal calf serum (Hyclone, Logan, UT) in DMEM supplemented with L-glutamine, antibiotics, insulin-transferrin-selenium, and HEPES (Mediatech, Manassas, VA). Inhibitors used and their final concentrations in cell culture were: 50μM Y-27632, 25μM FAK inhibitor-14, 0.5μM blebbistatin, or 20μM U-0126 (Santa Cruz Biotech, Dallas, TX). Unless otherwise noted, functional assays and gene expression analysis were performed 24h after hepatocyte plating.
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3

Suppressing Metastasis via CuS@SiO2 NPs

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Metastasis suppression was shown, and the potential regulatory protein levels changed significantly. To clarify the relationship between the SRC/FAK signaling pathway and the MMP-2/MMP-9 suppression related to the treatment by the CuS@SiO2 NPs (80 μg/mL), the SRC inhibitor PP1 (Santa Cruz Biotechnology Inc., Dallas, TX, USA) and FAK inhibitor 14 (Santa Cruz Biotechnology Inc.) were used separately in migration experiments (1 μmol/mL) to clarify the variations in SRC and FAK.
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4

Antibody Sources and Cell Signaling Inhibitors

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Antibodies were obtained from the following companies: Anti-human TGFBI polyclonal antibody (LS-C332168, LSBio, Shirley, MA, USA), Anti-human TAGLN antibody (6G6, sc-53932, Santa Cruz), Anti-HA-probe polyclonal antibody (Y-11, sc-805, Santa Cruz), and Anti-ß-actin monoclonal antibody (A-5441, SIGMA). FAK Inhibitor 14 was obtained from Santa Cruz. Puromycin and G418 were obtained from FUJIFILM Wako Pure Chemical Corp., Osaka, Japan.
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5

Lung Cancer Stem Cell Isolation

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Human lung cancer cell lines A549 and Calu-3 were obtained from the Korea Cell Line Bank (Seoul, Korea) and were grown in RPMI 1640 or DMEM medium supplemented with 10% (v/v) fetal bovine serum (FBS; Invitrogen, Carlsbad, CA, USA) and 1% penicillin/streptomycin. Cells were incubated at 37°C in a humidified atmosphere of 5% CO2. During the sphere-forming assay, cells were suspended in a stem cell–permissive medium including DMEM-F12 (Invitrogen), 20 ng/mL of epidermal growth factor, basic fibroblast growth factor (20 ng/mL) and 2% B27 serum-free supplement (1:50). Then, they were seeded on an ultra-low attachment 96-well plate (Corning Inc., Corning, NY, USA). CHIR99021 (STEMCELL Technologies, Vancouver, BC, Canada), FAK inhibitor 14 (Santa Cruz, CA, USA), and STAT inhibitor VII (Santa Cruz) were used for inactivation of GSK3β, FAK, and STAT3 in the cultured cells respectively.
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6

Antagomir Treatment and Cellular Signaling

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Pharmacological inhibitors used in this study are summarized in Fig. S1 and Table S1. HLEKs or hTCEpi cells were plated in a six-well plate. After overnight incubation, the cells were exposed to ir-antago, antago-103, or antago-107 (or mixture of antago-103 and antago-107) with and without an inhibitor. For the sequential treatment schedule, cells were treated with ir-antago, antago-103, or antago-107 for 24 h for the generation of vacuoles. After 24 h, each inhibitor was applied in cells. Amiloride, EIPA, roscovitine, manumycin A, Ro-32-0432, FAK inhibitor 14, NSC23766, EUK134, 8-bromo-cAMP, VU0155069, Go6983, Rottlerin, IBMX, and propranolol hydrochloride were obtained from Santa Cruz Biotechnology, Inc.; O-tricyclo[5.2.1.0(2,6)]dec-9-yl dithiocarbonate potassium salt (D609), l-α-phosphatidic acid sodium salt, and chloroquine were obtained from Sigma-Aldrich. BafA1 was from Cayman. PP2 was from EMD Millipore. ZCL278 was from Tocris Bioscience. SB203580 was from Cell Signaling Technology. BI-D1870 was from Enzo Life Sciences. Z-VAD-FMK was from BD. For short-term treatment of BafA1, cells were pretreated with BafA1 for 1 h, then medium with BafA1 was removed and cells were incubated in fresh medium with antagomirs for 24 h.
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7

Inhibition of Cell Signaling Pathways

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Cells were treated with dimethyl sulfoxide (DMSO), 1, 5 or 10 µM U0126 (Cell Signaling Technology), gefitinib (Santa Cruz Biotechnology, Inc., Dallas, TX), or FAK inhibitor 14 (CAS 4506-66-5, Santa Cruz Biotechnology, Inc.) for 48 hr prior to preparation of cell extracts or total RNA isolation, as described above.
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8

Inhibition of Angiotensin II Signaling

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Angiotensin II (human), acetylcholine, losartan, ibuprofen, nifedipine, PF-431396 hydrate, salicylic acid, and phenylephrine were purchased from Sigma (St. Louis, MO). Prostaglandin E2 and SC-236 were purchased from Cayman Chemical (Ann Arbor, MI). PD123319 was purchased from Tocris (Bristol, UK). Y-27632 was purchased from Abcam Biochemicals (Cambridge, MA). EGTA was purchased from Thermo Fisher Scientific (Waltham, MA). FAK inhibitor 14 was purchased from Santa Cruz Biotechnology (Dallas, TX). (Sar1,Ile4,8)-Angiotensin II Trifluoroacetate salt was purchased from Bachem (Bubendorf, Switzerland). The Vanderbilt Chemical Synthesis Core synthesized DG-041. Salicylamine was a gift from L. Jackson Roberts (Vanderbilt University).
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9

Overexpression and Characterization of ERβ2 and ERβ5

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Full-length sequences of ERβ2 and ERβ5 were assembled from synthetic oligonucleotides by GeneArt Gene Syntheses and cloned into pcDNA3.1 V5-His A (Life technologies, Waltham, MA). The final constructs were verified by sequencing and transfected along with the control vector into ES-2, OVCA420 and TOV-21G cells using Lipofectamine 3000 (Life technologies) and then selected with G418 (800 μg/ml) (Life technologies) [24 (link), 25 (link)]. For FAK inhibitor treatment, ERβ5 overexpressing cells were plated 24 h before treating with the FAK inhibitor 14 (5 μM; Santa Cruz, Santa Cruz, CA) or vehicle (water). After 24 h, cells were harvested for immunoblotting.
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10

Wnt Signaling Pathway Modulator Assay

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Cells were seeded in a 24 well plate (Primaria, BD Biosciences, Breda, The Netherlands) at a density of 100,000 CMT1, CMT-U27 and CMT9 cells and 80,000 CIPm cells, to reach an 80 % density 24 h before transfection. Transfection was performed in FBS-free medium using 3 μl Lipofectamine 2000 (Invitrogen), 800 ng pTOPFLASH (TOP) or pFOPFLASH (FOP) (gift from Prof Dr Hans Clevers, Hubrecht Institute, The Netherlands) and 0.5 ng human ß-actin-promoter renilla construct [22 (link)] as an internal control. Transfection was stopped after 5 h by adding the same volume DMEM/F12 supplemented with 20 % FBS. Cells were treated with 100 nM Everolimus (Selleckchem, Munich, Germany), 50 nM BEZ235, (Selleckchem), 20 μM Src-I1 (Enzo, Lausen, Zwitserland), or 1 μM FAK Inhibitor 14, (Santa Cruz, Heidelberg, Germany) for 40 h. All the compounds were dissolved in DMSO and diluted in medium to a final concentration of 0.2 % DMSO. The firefly and renilla luciferase activities were measured using a Dual-Luciferase Assay System (Promega, Leiden, The Netherlands) in a Centro LB 960 luminometer (Berthold Technologies, Vilvoorde, Belgium).
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