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39 protocols using anti srebp 1

1

Ceramide Regulation of Cellular Stress

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Agents were purchased/obtained as follows: (1) bortezomib (Biovision, Palo Alto, CA); (2) fumonisin B1, palmitate, 4-PBA (4-phenylbutyric acid), TUDCA (tauroursodeoxycholic acid), and anti-α-tubulin, anti-HA and anti-CerS2 antibodies (Sigma-Aldrich, St Louis, MO); (3) ceramides (fatty acyl lengths C16, C18, C20, C22, and C24) and C17 ceramide (d17:1/C18:0) (Avanti Polar Lipid, Alabaster, AL); (4) anti-GRP78, anti-CHOP, anti-FAS, anti-phospho-eiF2α, anti-eiF2α, anti-PERK, and anti-SCD-1 antibodies (Cell Signaling Technology, Beverly, MA); (5) anti-SREBP-1, anti-phospho-PERK and anti-CerS6 antibodies (Santa Cruz Biotechnology, Santa Cruz, CA); (6) anti-GAPDH (glyceraldehyde 3-phosphate dehydrogenase) antibody (Millipore, Temecula, CA); (7) anti-INSIG-1 antibody (Abcam, Cambridge, MA); (8) anti-mouse-HRP (horseradish peroxidase) and anti-rabbit-HRP antibodies (Jackson Laboratory, Bar Harbor, ME).
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2

Evaluating Protein Expression in PCa Cells

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The cell lysates were prepared from PCa cells treated with GTEE or vehicle (0.3% ethanol) using PRO-PREP Protein Extraction Solution (iNtRON technology, South Korea) with protease inhibitors added. The protein concentrations of the cell lysates were assayed using a Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific). For Western blotting, 50 µg of protein extract was loaded into the sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred onto polyvinylidene difluoride (PVDF) membranes. After blocking by 5% non-fat milk in PBST (PBS with Tween-20) buffer for 1 h at room temperature, PVDF membranes were incubated with primary antibodies for overnight at 4 °C, followed by incubation with a horseradish peroxidase (HRP)-conjugated secondary antibody. The reactive signals were visualized using an Enhanced Chemiluminescence Kit (Amersham Biosciences, Arlington Heights, IL, USA). Subsequently, the reactive protein bands were scanned and quantified using ImageJ software. Primary antibodies were used as follows: anti-SREBP-1, anti-FASN, anti-AR (Santa Cruz Biotechnology, Dallas, TX, USA), anti-SREBP-2 (Abcam, Cambridge, MA, USA), anti-caspase 3 (Novus Biologicals, Littleton, CO, USA), anti-PARP (GeneTex, Irvine, CA, USA), and anti-β-actin (Millipore, Burlington, MA, USA).
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3

Western Blot Analysis of Metabolic Regulators

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Mouse liver, skeletal muscle or white adipose tissue were dissected and immediately frozen in liquid nitrogen. Whole-cell extracts were prepared using lysis buffer (10 mM Tris-HCl, pH 8.0, 150 mM NaCl, 1 mM EDTA, 1% Igepal CA-630, 0.2mM Na3VO4 and a protease inhibitor cocktail (Roche Diagnostics)). Protein concentration was measured by colorimetric assay (Bio-Rad Laboratories, Richmond, CA, USA) and equal amount of proteins was loaded onto SDS gels. After transfer to polyvinylidene difluoride membranes, proteins were probed with primary antibodies (1 μg/ml), followed by horseradish peroxidase-conjugated secondary antibodies, washed and visualized with SuperSignal West Pico/Dura chemiluminescent substrate (Pierce-Thermo Fisher Scientific, Waltham, MA, USA). Blots were reprobed with β-actin-specific antibody for loading controls.
Anti-IRS-1 (Santa Cruz Biotechnology), anti-IRS-2 (Santa Cruz Biotechnology), anti-SCD-1 (Santa Cruz Biotechnology), anti-IRβ (Santa Cruz Biotechnology), anti-pAkt2 (Cell Signaling Technology, Danvers, MA, USA), anti-SREBP-1 (Santa Cruz Biotechnology), anti-ACCα (Santa Cruz Biotechnology), anti-FAS (Santa Cruz Biotechnology), anti-SREBP-2 (Santa Cruz Biotechnology), anti-HMGCR (Santa Cruz Biotechnology), anti-Albumin (Santa Cruz Biotechnology) and anti-β-actin (Santa Cruz Biotechnology) antibodies were used as primary antibodies.
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4

Western Blot Analysis of SREBP-1 and JNK

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Immunoblotting was performed as described previously [34 (link)]. Aliquots of nuclear extract (25 μg) and total lysate (50 μg) proteins extracted from livers were loaded onto 10% SDS-PAGE gels and transferred to PDVF membranes (Millipore, Darmstadt, Germany). The membranes were probed with anti-SREBP-1 (Santa Cruz Biotechnology, Dallas, USA), lamin A/C, phospho-JNK, and total JNK (Cell Signaling Technology, Denvers, USA) followed by horseradish peroxidase (HRP)-conjugated anti-mouse or rabbit IgG (Cell Signaling Technology, Denvers, USA). Immune complexes were visualized using enhanced chemiluminescence (GE Healthcare Japan, Tokyo, Japan).
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5

Immunoblotting Analysis of Cellular Proteins

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For immunoblotting analysis of the different proteins assessed in this study, cells were grown to 70–80% confluence and subjected to treatment. For total lysates’ preparation, cells were harvested and lysed in 200 µL of lysis buffer (50 mM Tris–HCl, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 2 mM sodium fluoride, 2 mM EDTA, 0.1% SDS) containing a mixture of protease inhibitors (aprotinin, phenylmethylsulfonyl fluoride, and sodium orthovanadate; Sigma). The same amounts of proteins from the total lysate or cytosolic fraction were resolved on SDS-polyacrylamide gel, transferred to a nitrocellulose membrane and probed with appropriate primary antibodies (Anti-SREBP1, Anti-SREBP2, Anti-GPAT, Anti-FASN, Anti-HMGR, Anti-LDLR, Santa Cruz Biotechnology, Santa Cruz, CA, USA and Merck KGaA, Darmstadt, Germany). To confirm equal loading and transfer, membranes were stripped and incubated with anti-GAPDH antibody [75 (link)] (Santa Cruz Biotechnology). The antigen–antibody complex was detected by incubating membranes with peroxidase-coupled goat anti-mouse antibody (Santa Cruz Biotechnology) and revealed using an ECL System (Bio-Rad Laboratories, Hercules, CA, USA) [76 (link),77 (link)]. Blots were then exposed to film, and the bands of interest were quantified using ImageJ software (version 1.52a) [78 (link)].
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6

Quantifying Hepatic ChREBP and SREBP-1

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ChREBP and SREBP-1 protein expression in maternal and fetal livers was assessed by western blotting. Liver tissues (100 mg) were homogenized as described above. Proteins (40 μg/lane, determined by BioRad protein assay) were separated by electrophoresis using Nu-PAGE® gels (Life Technologies, Grand Island, NY) and transferred to PVDF membranes (Millipore). The blots were probed with anti-SREBP-1 (Santa Cruz Biotechnology, Dallas TX), anti-ChREBP (Novus Biologicals, Littleton, CO), and anti-GAPDH (Cell Signaling Technology, Danvers, MA, USA) antibodies, followed by near infrared-fluorescently labeled secondary antibodies (LI-COR, diluted 1:15,000), and revealed using the Odyssey infrared imaging system (LI-COR Biosciences), as previously described [28 (link), 32 (link)]. Band densities (SREBP-1: GAPDH and ChREBP:GAPDH) were assessed using Image J software (NIH).
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7

Immunohistochemical Analysis of Fibrosis Markers

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After de-paraffinization, the sections were incubated with a 3% H2O2 solution to block endogenous peroxidases. Antigen retrieval was carried out using 0.1 M sodium citrate (pH 6.0) for 60 min. Sections were incubated with anti-α-SMA (1:100; BIOSS), anti-desmin (1:100; Abcam), anti-TGF-β1 (1:100; Santa Cruz Biotechnology, Inc.), anti-NF-κB p65 (1:100; Affinity Biosciences) or anti-SREBP-1 (1:100; Santa Cruz Biotechnology, Inc.) antibodies overnight at 4 °C, and a horseradish peroxidase-conjugated secondary antibody and diaminobenzidine substrate were added sequentially. Following hematoxylin counterstaining and dehydration, the sections were mounted and observed under a Leica DM4000B photomicroscope (Leica Microsystems, Inc.).
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8

Protein Expression Analysis in Xenograft Tumors

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Proteins were extracted from the cultured cells, supernatants and the xenograft tumours using Complete Lysis-M buffer (Roche). Equal amounts of protein were incubated with anti-FASN (BD Bioscience), anti-SREBP-1 (Santa Cruz Biotechnologies, Dallas, TX, USA), anti-AKT, anti-phospho-AKT (P-AKT, Ser473), anti-ERK1/2, anti-phospho-ERK1/2 (P-ERK1/2, Thr202/Tyr204), anti-AMPK, anti-phospho-AMPK (P-AMPK, Thr172) or anti-beta-actin (Cell Signaling Technology) antibody.
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9

Protein Expression Analysis in PCa Cells

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Total protein samples were extracted from vehicle- or DFE (20 µg/mL)-treated PCa cells by PRO-PREP Protein Extraction Solution (iNtRON technology, Seoul, South Korea) adding with protease inhibitors. A PierceTM BCA Protein Assay Kit (Thermo Fisher Scientific) was utilized to determine the concentrations of proteins. The equal amounts of protein samples were loaded into SDS-PAGE gels for electrophoresis and then proteins were transferred onto polyvinylidene difluoride (PVDF) membranes. Subsequently, the blotted membranes were blocked using 5% non-fat milk in PBS with Tween-20. After blocking, the membranes were incubated with primary antibodies for overnight, followed by incubation with a horseradish peroxidase-conjugated secondary antibody. Primary antibodies were used in this study as follow: anti-AR, anti-SREBP-1, anti-FASN (Santa Cruz Biotechnology, Dallas, TX, USA), anti-SREBP-2 (abcam, Cambridge, MA, USA), anti-caspase-3 (Novus Biologicals, Littleton, CO, USA), anti-PARP (GeneTex, Irvine, CA, USA), and anti-β-actin (Millipore, Burlington, MA, USA). The protein signals were visualized using an Enhanced Chemiluminescence Kit (Amersham Biosciences, Arlington Heights, IL, USA) and an imaging system (ImageQuant LAS 4000; GE Healthcare, Pittsburgh, PA, USA). The ImageJ software was utilized to quantify specific protein bands by normalized a loading control, β-actin.
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10

Isolation and Characterization of HsA from H. lyrata

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HsA was isolated from H. lyrata as previously reported (11 (link)). T0901317 was supplied by Cayman Chemical (Ann Arbor, MI, USA). Anti-SREBP1 was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-FASN, anti-ACC, and horseradish peroxidase-conjugated secondary antibodies were obtained from Cell Signaling Technology (Beverly, MA, USA). Thiazolyl blue tetrazolium bromide (MTT), GW3965, β-actin antibody, oil red O, hematoxylin, eosin, and other reagents were supplied by Sigma-Aldrich (St. Louis, MO, USA).
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