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29 protocols using liberase blendzyme

1

Deriving Immortalized Pancreatic Fibroblasts

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pMAFs were derived from mCherry-GFP-LC3 homozygous mice (kindly provided by Ian Ganley, The University of Dundee). After aseptic dissection, the pancreas was finely minced and digested in a “liberase blendzyme” (Roche, 05401020001) for 60 min at 37°C. Tissue fragments were then plated onto 10-cm culture dishes and allowed to attach. Fibroblasts were seen to “crawl” out of the tissue for up to 10 d. These fibroblasts were harvested and sub-cultured in RPMI 1640 medium (GlutaMAX supplemented, Life Technologies, 72,400,021) with 10% FCS, 50 µM of 2-mercaptoethanol (Sigma Aldrich, M6250) and 50 µM of asparagine (Sigma Aldrich, A4159). The fibroblasts divide rapidly for a few divisions, then slow down and cell numbers remain constant or decline slightly for up to 6–8 weeks. Following on from this “crisis” the cells once again return to fast replication at which point they are considered immortal and suitable for use in ongoing studies.
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2

Isolation and Manipulation of Sirt1/3-Deficient Hepatocytes

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Primary hepatocytes from Sirt1 floxed (Sirt1L2/L2) or Sirt3 floxed (Sirt3L2/L2) mice (described in (21 (link)) and (23 (link)), respectively) were isolated with Liberase Blendzyme (Roche) perfusion as described previously with minor modifications (24 ). Isolated hepatocytes were then plated in DMEM (Gibco; 4.5 g/l glucose) with 10% FBS and penicillin and streptomycin and maintained at 37°C in a 5% CO2 atmosphere. Four hours after plating, cells were transduced with Ad-GFP or an Ad-Cre virus at a MOI = 5 to generate matched Sirt1−/− or Sirt3−/− (loss-of-function) and Sirt1L2/L2 or Sirt3L2/L2 wild-type hepatocytes, respectively. Hepatocytes were then incubated overnight and before changing media. Primary hepatocytes were then treated with 1mM NR or vehicle (ddH20) for 24 hrs.
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3

Isolation of Cardiac Cell Types

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Non-myocyte cells and cardiomyocytes were obtained by the Langendorff method using retrograde perfusion through the aorta. The heart was removed rapidly and retrograde-perfused under constant pressure (60 mmHg; 37 °C, 8 min) in Ca2+-free buffer (113 mM NaCl, 4.7 mM KCl, 1.2 mM MgSO4, 5.5 mM glucose, 0.6 mM KH2PO4, 0.6 mM Na2HPO4, 12 mM NaHCO3, 10 mM KHCO3, 10 mM Hepes, 10 mM 2,3-butanedione monoxime, and 30 mM taurine). Digestion was initiated by adding a mixture of recombinant enzymes (0.2 mg/ml Liberase Blendzyme (Roche, 05401127001), 0.14 mg/ml trypsin (ThermoFisher, 15090046), and 12.5 μM CaCl2) to the perfusion solution. When the heart became swollen (10 min), it was removed and gently teased into small pieces with fine forceps in the same enzyme solution. Heart tissue was further dissociated mechanically using 2, 1.5, and 1 mm-diameter pipettes until all large heart tissue pieces were dispersed. The digestion buffer was neutralized with stopping buffer (10% fetal bovine serum (FBS; Capricorn, FBS-12A), 12.5 μM CaCl2). Cardiomyocytes were pelleted by gravity (7 times, 30 min each), and the supernatant was used as a source of non-myocyte cardiac cells [27 (link)].
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4

Endothelin-1 Pathway Immunoblotting

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Rabbit polyclonal anti-ECE1 (Life Technologies, Grand Island, NY, USA; PA5-81948) and rabbit polyclonal anti-ET-1 (Proteintech, Rosemont, IL, USA; 12191–1-AP) were used at 1:200 dilutions, while rabbit monoclonal anti-beta actin (Abcam, Cambridge, MA, USA; MA515739) was used at 1:1000 dilutions. Anti-rabbit secondary antibody (Abcam, Cambridge, MA, USA; ab6721) was used at 1:10000 dilutions. Unless otherwise specified, all reagents were purchased from Sigma–Aldrich (St. Louis, MO, USA). CGS 35066 was purchased from Bio-Techne (Minneapolis, MN, USA) and Bosentan from Cayman Chemical; Ann Arbor, MI, USA). Liberase blendzyme was purchased from Roche Life Science (Indianapolis, IN, USA).
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5

Tumor and Spleen Analysis by Flow Cytometry

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When the tumors reached a mean volume >400 mm3, the mice were randomized into four study groups: PBS + vehicle, PBS + alisertib, HSV1716 + vehicle and HSV1716 + alisertib. A single dose of PBS or HSV1716 was injected intratumorally on day 0 followed by oral gavage administration of vehicle or alisertib at 24 hours and 48 hours post infection. Tumors and spleens were harvested at 72 hours post infection and then prepared for flow cytometric analysis. Briefly, fresh whole spleens were transferred to 2 mL PBS and then smashed through a 70 μM cell strainer with 5 mL syringe plunger. Whole tumors were transferred to 6-well dishes containing 2 mL PBS and then processed as previously described [56 (link)]. Briefly, tumors were minced by mechanical chopping and incubated in PBS containing 25 μg/mL liberase blendzyme (Roche Diagnostics., Indianapolis, IN) and 150 μg/mL DNAse I for 1 hour at 37°C. Tumor samples were then passed through a 70 μM cell strainer with the aid of a 5 mL syringe plunger. After washing splenocytes and tumor cell suspensions once with PBS, the cell suspensions were cleared of red blood cells (RBCs) with ACK lysing buffer (Lonza, Walkersville, MD). The cells were then blocked with 5% mouse Fc blocking reagent (Miltenyi Biotec Inc., San Diego, CA) in FACS buffer (1% FBS and 1mM EDTA in PBS) and analyzed by flow cytometry.
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6

Isolation of Adult Ventricular Myocytes

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Adult ventricular myocytes were isolated as described previously [31 (link)]. In brief, hearts from 2 month-old mice were removed after treatment with heparin (0.35 units) under anesthesia (Nembutal, 100 mg/kg), and cannulated for retrograde perfusion with a solution containing liberase blendzyme (Roche, 05401151001) followed by a gentle mechanical disassociation using sterile plastic pipettes to generate individual myocytes. After transferring to a new tube, myocytes were allowed to settle by gravity followed by CaCl2 re-introduction. The cell pellet was resuspended in MEM (Modified Eagles Medium) plus 5% fetal bovine serum, and cells were counted and plated on laminin-coated dishes.
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7

Isolation and Culture of Heart Inflammatory Cells

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Isolation of heart inflammatory cells was previously described.6 (link) Briefly, myocarditis-positive hearts were perfused, dissected, and digested with Liberase Blendzyme (Roche) for 45 min at 37˚C and tissue suspensions were passed sequentially through 70 µm and 40 µm cell strainers. Cells were expanded up to 3 passages in the growth medium Iscove`s modified Dulbecco`s medium (IMDM; Corning) supplemented with 20% inactivated FCS (ThermoFisher Scientific); 10 000 U/mL penicillin/streptomycin (Corning); and 0.1 mM 2-mercaptoethanol (Merck). In certain experiments, cultured cells were stimulated with 10 ng/mL recombinant human TGF-β1 (Peprotech). Detail description is provided in the supplementary method section.
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8

Culturing Adult and Embryonic Mouse DRG Neurons

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For adult mouse DRG neuronal cultures, mice were euthanized with CO2 and decapitated. The spine was removed and placed in a Petri dish with Hanks balanced salt solution (Corning, Manassas, VA, USA). Dorsal root ganglia were dissected and dissociated in 0.28 Wünsch units/mL Liberase Blendzyme (Roche Diagnostics Corporation, Indianapolis, IN, USA) for 1 hour at 37°C. Neurons were plated on poly-d-lysine (PDL) and laminin-coated coverslips and cultured in Neurobasal-A Medium (Invitrogen (Thermo Fisher Scientific), Waltham, MA, USA) supplemented with B-27 Supplement (Invitrogen), l-glutamine (Invitrogen), and β-nerve growth factor (NGF) (Harlan Bioproducts for Science, Indianapolis, IN, USA). Cultured neurons were stored in a humidified incubator in 5% CO2 at 37°C.
For embryonic DRG neuronal culture, embryos (E13.5) from pregnant female mice or embryos (E15) from pregnant female Sprague Darley rats were used. Dorsal root ganglia were cultured in media containing NGF for 10 days (mouse) or 5 days (rat) based on time necessary for peptide expression (refer to Tomasello et al19 (link) for procedure).
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9

Isolation and culture of sensory neurons

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MEM, FBS, and penicillin-streptomycin were purchased from Life Technologies. Liberase Blendzyme and collagenase were from Roche Molecular Biochemicals, and trypsin was from Worthington. α-conopeptides Vc1.1 and RgIA were synthesized as reported previously (Cartier et al., 1996 (link); Ellison et al., 2008 (link)). All other chemicals were obtained from Sigma-Aldrich.
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10

Isolation of Genetically Modified Murine Cardiomyocytes

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Wild-type and genetically modified C57BL/6 mice (10–12 weeks old) were used for cardiomyocyte preparation. Genetically modified mice carried a heterozygous (+/-) or a homozygous deletion (-/-) of the KChIP2 gene. The generation and reactivation of the KChIP2 knockout mouse line have been previously described [9 (link), 21 (link)]. For our experiments the animals were obtained from the local animal facility, where they were held at room temperature (20–22°C), with food and water available ad libitum, and where they showed normal breeding. Genotyping was done based on tail biopsy. Mice were sacrificed by cervical dislocation under isoflurane anesthesia. The heart was excised, mounted on a temperature-controlled (37°C) Langendorff perfusion system and rinsed with a Ca2+-free solution (113 mM NaCl, 4.7 mM KCl, 0.6 mM KH2PO4, 0.6 mM Na2HPO4, 1.2 mM MgSO4, 12 mM NaHCO3, 10 mM KHCO3, 30 mM taurine, 5.5 mM glucose, 10 mM HEPES, pH 7.46). Then the heart was digested for 9–10 min with the same solution containing 0.1 mg/ml Liberase Blendzyme (Roche). Epicardial tissue was obtained from the left ventricular free wall and dissociated into single cells. Ca2+ was stepwise reintroduced to a final concentration of 0.5–1 mM.
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