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5 protocols using yo pro 1 assay

1

Seahorse XFe96 Analyzer for Glycolysis and Mitochondrial Respiration

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ECAR and OCR were measured in real-time with Glycolysis Stress Test Kit and Mito Stress Test Kit, respectively, using the Seahorse XFe96 Analyser (Seahorse Biosciences, USA) according to the previous study [31 (link)]. Data were normalized by cell numbers that was measured by the YO-PRO®-1 Assay (Thermo Fisher Scientific).
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2

Metabolic Profiling of Microglia under Inflammatory Conditions

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BV2 and B6M7 cells were seeded in XFe 96-well microplates (6000 cells/well) (Agilent Technologies, Sana Clara, USA) with/without 5 μM STF31 (C23H25N3O3S, Millipore, Watford, UK) for 24 h, followed by LPS + IFNγ (both 100 ng/ml) or IL-4 (20 ng/ml) stimulation for a further 24 h. Cells were washed and incubated in base medium (Agilent Technologies) at 37 °C for 1 h. Extracellular Acidification Rate (ECAR) and Oxygen Consumption Rate (OCR) were measured in real-time with Glycolysis Stress Test Kit and Mito Stress Test Kit respectively using the Seahorse XFe96 Analyser (Agilent Technologies) following manufacturer’s instructions. Data were normalized by cell numbers that was measured by the YO-PRO®-1 Assay (Thermo Fisher Scientific).
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Cellular Bioenergetics Profiling Protocol

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The principle of cell bioenergy testing is based on the continuous injection of substances with different properties into the cellular oxidative phosphorylation system to emphasize the metabolic activities of the living cells. The ECARs and OCRs were detected using a glycolysis stress test kit and a Mito stress test kit46 (link), respectively, on a Seahorse Extracellular Flux (XF-96) analyzer (Seahorse Bioscience, Billerica, MA, USA). Mitochondrial function was analyzed in the presence of classical modulators of the electron transport chain, including oligomycin, FCCP (carbonylcyanide p-trifluoromethoxyphenylhydrazone), and rotenone. The compounds used for glycolysis stress testing were glucose, oligomycin A, and 2-deoxy-d-glucose (2-DG; inhibits glycolysis). Normalized data for determining the number of cells were detected by YO-PRO®-1 Assay (Thermo Fisher Scientific). OCR was calculated in pmoles min−1 and ECAR in mpH min−1.
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Mitochondrial Function Evaluation of GFP-NSCs

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GFP-NSCs and mms6-GFP-NSCs were treated with/without ferric citrate (320 μM) for 2 weeks. These treated cells were then seeded in XFe 96-well microplates (6,000 cells/well) (Agilent Technologies, Santa Clara, CA, USA) overnight. Cells were washed and incubated in a base medium (Agilent Technologies) at 37°C for 1 h. The oxygen consumption rate (OCR) was measured in real time with a Mito Stress Test Kit using a Seahorse XFe96 Analyzer (Agilent Technologies) following the manufacturer’s instructions. Data were normalized by cell numbers that were measured by a YO-PRO®-1 Assay (Thermo Fisher Scientific).
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5

Cellular Respiration and Glycolysis Profiling

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ATP production rate, extracellular acidification rate (ECAR), and oxygen consumption rate (OCR) were measured with a Real-Time ATP Rate Kit, Mito Stress Test Kit, and Glycolysis Rate Kit, respectively, using a Seahorse XFe24 Analyzer (Agilent Technologies, CA, USA). The HUVECs were seeded on XFe24-well microplates (20,000 cells/well), and the Seahorse 1640 media were supplemented with 2 mM l-glutamine, 10 mM glucose, and 1 mM sodium pyruvate. The sensor cartridge was incubated with 1 mL XF Calibrant (pH 7.4) per well at 37 °C without CO2 overnight. OCR and ECAR were detected by sequential injections of compounds at the specified time points according to the instructions of the manufacturer. Data were normalized by cell numbers measured by the YOPRO®-1 Assay (Thermo Fisher Scientific) and analyzed using Wave software (Agilent Technologies).
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