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9 protocols using gam0072

1

Phenotypic Characterization of MSCs and MSC-EVs

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For phenotypic characterization, MSCs and MSC-EVs were lysed via lysis buffer (10 mM Tris-HCl, pH 7.4, 150 mM NaCl, 0.5% Nonidet P-40, 1 mM EDTA, 1 mM Na3VO4, and 1 mM PMSF). Equal amount of total proteins from samples (20 μg or 40 μg) were separated by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA), and detected via Western blot analysis. The primary antibodies used in the study included the following: CD63 (0.5 μg/ml; ab193349, Abcam, Cambridge, MA), CD81 (1:1000; sc-166029, Santa Cruz Biotechnology, Santa Cruz, CA), CD105 (1:1000; ab169545, Abcam), CD44 (1:5000; ab157107, Abcam), GM130 (1:5000; ab52649, Abcam), and Calnexin (1:5000; ab133615, Abcam). After washing, membranes were incubated with secondary antibodies conjugated to horseradish peroxidase. Goat anti-Rabbit lgG (H+L) HRP Conjugated (1:5000, GAR0072, Multi Sciences, Hangzhou, China) and goat anti-Mouse lgG (H+L) HRP Conjugated (1:5000, GAM0072, Multi Sciences, Hangzhou, China) were used as Secondary antibodies. The signals were detected via enzyme-linked chemiluminescence using the EZ-ECL kit (Biological Industries, Kibbutz Beit-Haemek, Israel).
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2

Immunoblotting for Cell Cycle Regulators

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Harvested cells were lysed using M‐PERTM Mammalian Protein Extraction Reagent (Thermo Scientific) with protease and phosphatase inhibitors (Beyotime). Protein concentration was determined by BCA protein quantification kit (Beyotime). Equal amounts of the proteins were loaded into SurePAGEᵀᴹ precast polyacrylamide gels with a gradient between 4% and 20% (GenScript) and transferred to PVDF membranes (Millipore) by eBlot® L1 wet protein transfer system (GenScript). After blocking, the membranes were incubated with primary antibodies overnight at 4℃. Then, the membranes were incubated with HRP‐conjugated anti‐mouse or anti‐rabbit secondary antibody (GAM0072 or GAR0072, Multisciences). The protein bands were visualized by High‐sig ECL Western Blotting Substrate (Tanon). Images were collected using the Tanon‐5200 Chemiluminescent Imaging System (Tanon). The expression of β‐actin was detected as a loading control.
All primary antibodies were commercial products. Anti‐TAB182, anti‐CDC2 (sc‐137035), anti‐phospho‐CDC2 (sc‐136014) were purchased from Santa Cruz. Anti‐FHL2 was purchased from Proteintech. Anti‐CHK2 (ab207446), anti‐phospho‐CHK2 (ab32148) were purchased from Abcam; anti‐CDC25C (YM0142), anti‐phospho‐CDC25C (YP0058) were purchased from ImmunoWay. Anti‐β‐actin (ab008) was purchased from Multisciences.
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3

Quantification of Guanylate Cyclase and Protein Kinase cGMP Levels

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Samples were homogenized in liquid nitrogen and thawed in RIPA buffer containing protease inhibitors. The protein abundances of GUCY1A3 (guanylate cyclase 1 soluble subunit alpha), GUCY1B3 (guanylate cyclase 1 soluble subunit beta), and PRKG1 (protein kinase cGMP-dependent 1) were normalized to GAPDH. The primary antibodies for GUCY1A3 (Proteintech, Cat#12605-1-AP), GUCY1B3 (Proteintech, Cat#19011-1-AP), and PRKG1 (Proteintech, Cat#21646-1-AP) were incubated overnight at 4°C. Secondary antibodies (goat anti-mouse for GAPDH, GAM0072; goat anti-rabbit for the others, GAR0072, Multisciences) were incubated for 1 h at room temperature. The immunoreactive bands were visualized using the UVP imaging system. Imaging signals were digitized and analyzed, and the ratio of band intensity to GAPDH was subsequently obtained to quantify relative protein expression.
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4

Western Blot Analysis of Protein Expression

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Total cellular proteins were extracted using RIPA buffer (KenGEN). The protein concentration was determined with a BCA Protein Assay Kit (Beyotime). Next, total proteins were separated by 10% SDS–PAGE. Then, the separated proteins were transferred to PVDF membranes (Millipore), which were then blocked for 2 h at room temperature with 5% skim milk. The membranes were incubated with the following primary antibodies at 1:500 dilutions overnight at 4°C: anti‐ZNF148 (A7001, Abclonal) or anti‐PTX3 (12669, Abclonal). After washing with TBST three times, the PVDF membranes were incubated with horseradish peroxidase‐conjugated secondary antibody (1:5000, GAM0072, MULTI SCIENCES). GAPDH (1:20,000, 10494‐1‐AP, Proteintech) was used as the control. The bands on the PVDF membranes were visualized and images were captured under Tanon 4600SF (Tanon).
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5

Protein Expression Analysis in Rat Brains

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Each rat was guillotined and the brain was quickly dissected out and lysed by ultrasonication in an ice bath. Twenty micrograms of total protein was fractionated on 10% polyacrylamide gel. Proteins were then transferred to PVDF membranes for 2 h at 200 mA in an ice bath. The membranes were blocked in 5% non-fat milk powder at RT for 2 h and then incubated with primary antibodies (GAPDH, 1:1000, Hangzhou Goodhere Biotechnology, AB-P-R001; P2X4Rs, 1:500, Alomone Labs, APR-002; and ATM, 1:100, Santa Cruz, CA; sc-23921) at 4°C overnight. Then, the membranes were incubated with HRP-conjugated secondary antibodies (GAR0072 or GAM0072, 1:2000, Multi Science, Hangzhou, China) at RT. Bands were visualized using an enhanced chemiluminescence detection kit for HRP (EZ-ECL, Biological Industries, Kibbutz Beit Haemek, Israel; 20-500-120) and appropriately exposed in a chemiluminescence imaging system (ChemiDoc XRS, Bio-Rad, Hercules, CA). Band intensities were measured using ImageJ. Protein expression was normalized to GAPDH.
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6

Antibody Profiling in Western Blots

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Antibodies used in Western blots were as the following: anti-β-actin (A5316, Sigma), anti-tubulin (T6734, Sigma), anti-MIG6 (WH0054206M1, Sigma), anti-pTyr239/240 SHC1 (2434, Cell Signaling), anti-SHC1 (610878, BD Bioscience), anti-phospho-p44/42 MAPK (9101, Cell Signaling), anti-p44/42 MAPK (9102, Cell Signaling), anti-GST (2625, Cell Signaling), and anti-HA tag (A01244, GenScript). Immunoreactivity was detected using horseradish-peroxidase (HRP)-conjugated secondary antibody (RAG0072 for anti-rabbit, GAM0072 for anti-mouse, 1:5,000 dilution, Multi Sciences, Hangzhou, China).
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7

Western Blot Analysis of Autophagy Markers

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A total of 1 × 106 cells were plated in each 60-mm dish and allowed to attach for 24 h before the treatments. After the treatments, the cells were lysed using RIPA buffer (Pierce, Rockford, USA) mixed with a protease inhibitor cocktail. The concentrations of proteins were determined using a Bio-Rad protein assay kit II (Bio-Rad Laboratories, 500-0002EDU). A total of 15 μg of protein from each sample was mixed with 5× Lane Marker Reducing Sample Buffer (Pierce, Rockford, USA), separated on a 12% SDS-polyacrylamide gel, then transferred to PVDF membranes (Merck Millipore, Billerica, USA), and incubated with 1:500 to 1:1000 dilutions of primary antibodies, including GAPDH (Santa Cruz Biotechnology, sc-47724), Beclin1 (Cell Signaling Technology, 3495S), LC3 (Sigma-Aldrich, L7543), P62 (MBL International, PM045), SAHH (Santa Cruz Biotechnology, sc-271389), and DNMT3B (Cell Signaling Technology, D7070). The protein bands were stained with horseradish peroxidase-conjugated secondary antibodies (MultiSciences, GAM0072, and GAR007). The protein bands were visualized by enhanced chemiluminescence (Merck Millipore, Billerica, USA). Fold changes in the intensity of the protein signals were reported as the mean of the results from three experiments.
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8

Protein Expression Analysis in HUV

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HUV were homogenized in liquid nitrogen and thawed in RIPA buffer containing protease inhibitors to obtain the whole cell lysates. The protein abundances of H1R, H2R, BKCaα, BKCaβ1, CACNA1C, CAMK2D, PKCα and PKCβ in the HUV were normalized to GAPDH. The primary antibodies for H1R (Cohesion Biosciences, CPA7350), H2R (Cohesion Biosciences, CPA1551), BKCaα (Santacruz, sc-374,142), BKCaβ1 (Immunoway, YN0522), CACNA1C (Proteintech, 21774-1-AP), CAMK2D (Proteintech, 20667-1-AP), PKCα (Cohesion Biosciences, CPA5525), and PKCβ (Proteintech, 12919-1-AP) were incubated overnight at 4℃. Following washing with Tris-buffered saline containing 0.2% Tween 20, the membranes were incubated with secondary antibodies (Multisciences, GAM0072 or GAR0072) for 1 h. The immunoreactive bands were visualized using Tanon UVP imaging system. Imaging signals were digitized and analyzed, and the ratio of the band intensity to GAPDH was subsequently obtained to quantify the relative protein expression.
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9

Comprehensive Protein Analysis Workflow

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Western blots were performed by separating proteins on SDS-PAGE gels followed by protein transfer to PVDF membranes (Bio-Rad). The antibodies used were: anti-PDGFD (sc-137030, Santa Cruz), anti-SOX2 (AF-2018, R&D), anti-BRACHYURY (sc-166962, Santa Cruz), anti-ERKs (4696, Cell Signaling Technology), anti-Phospho ERKs (4370, Cell Signaling Technology), anti-PDGFR-β (3169, Cell Signaling Technology), anti-Phospho PDGFR-β (Tyr1021) (2227, Cell Signaling Technology), anti-PECAM1 (222783, Abcom), anti-Phospho STAT3 (9145, Cell Signaling Technology), anti-STAT3 (9139, Cell Signaling Technology), anti-KDR (9698, Cell Signaling Technology), anti-HSP90 (7411, Cell Signaling Technology), anti-TUBULIN (RM2007, Ray Antibody), anti-β-ACTIN (RM2001, Ray Antibody), anti-GAPDH (70-Mab5465-040, MultiSciences), anti-HISTONE 3 (GB13102-1, Servicebio), Goat anti-mouse IgG (GAM0072, MultiSciences), Goat anti-rabbit IgG (GAR0072, MultiSciences), Rabbit anti-goat IgG (RAG0072, MultiSciences), anti-PDGFB (PA1-27394, Invitrogen), anti-uPA (17968-1-AP, Proteintech) and anti-PLASMIN (66399-1-Ig, Proteintech). The bands were visualized using a GBOX-CHEMI-XX8 device (SYNGENE).
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