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Axio observer z1

Manufactured by Hamamatsu Photonics
Sourced in Germany, Japan

The Axio Observer Z1 is a research-grade inverted microscope developed by Hamamatsu Photonics. It is designed to provide high-quality, reliable performance for a wide range of imaging applications. The core function of the Axio Observer Z1 is to enable advanced optical microscopy techniques, allowing users to study and analyze samples with exceptional clarity and precision.

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44 protocols using axio observer z1

1

Confocal Microscopy Cell Counting

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Confocal images were taken on Zeiss Axio-Observer Z1 with Apotome 2 and Hamamatsu Orca Flash 4.0LT camera and Zen Pro 2015 software. For cell counting we imported Zeiss z-stack images into Metamorph software (ver 7.8.13.0) and manually counted cells by scrolling through the z-stack and labeling individual cells.
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2

Quantitative Immunocytochemistry Imaging

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Immunocytochemistry images were obtained using a Zeiss Axio Observer Z1 inverted microscope with a Hamamatsu ORCA-ER CCD camera. The images were captured using a fixed exposure time for each fluorescent dye for all the samples. Confocal images were collected by a white light laser scanning Leica Stellaris 5 (Leicamicrosystems, Wetzlar, Germany) with a 20× objective, and the z-stack depth was within 10 μm (step = 1 μm). Quantification of cell number and fluorescence intensity was measured using the ImageJ software.
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3

Neutral Comet Assays for DNA Damage

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Neutral comet assays were performed as described by Olive and Banáth (48 (link)). Pictures of individual cells were taken with a Zeiss AxioObserver Z1 inverted microscope equipped with a cooled Hamamatsu ORCA AG Black and White charge-coupled device camera and analyzed with CASP software 1.2.3b2 (casplab.com/).
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4

Collagen Gel Migration Assay

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Control or genetically modified MDA-MB-231 cells were embedded in 1.5 mg/mL collagen gels glycated with or without 100 mM ribose. 3 h post embedding, cells were imaged using a Zeiss Axio Observer Z1 inverted microscope equipped with a Hamamatsu ORCA-ER camera and a 10×/0.3 NA objective and operated by AxioVision software. Brightfield images were taken every 20 min across an 18-h period. Cells were kept at 37°C, 5% CO2, and 40% humidity during the imaging.59 (link) Average migration speed of each individual cell was measured using ImageJ and the MTrackJ plugin.
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5

Zinc-Mediated Cell Aggregation Assay

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Aggregation phenotypes were directly observed after cell resuspension in TBS buffer (pH 7.4) or TBS buffer supplemented with 1 mM ZnCl2, addition of 1 mM EDTA, and further addition of 1 mM ZnCl2. Aggregation levels were observed in test tubes, by optical microscopy at low magnification (Zeiss Stemi DV4 stereomicroscope; Oberkochen, Germany) and at high magnification (Zeiss Axio Observer Z1 equipped with a Hamamatsu C10600 camera; Oberkochen, Germany).
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6

Wide-field Imaging of Neuronal Activity

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Neuronal activity mapping experiments were performed through wide-field spinning disk confocal microscopy. A spinning disk confocal microscope (W1 Yokogawa spinning disk module; Zeiss Axio Observer Z1) equipped with sCMOS camera (Hamamatsu Flash 4.0 with 2048 × 2048 chip) was used to capture p-MAPK-labeled individual tiles (optical magnification: 20X; pixel depth: 16 bit; image resolution: 0.625 pixels/µm; image size: 1024 × 1024 pixels, 561 laser). Tiles were stitched together using Slidebook 6.0 software to reconstruct a high-resolution image of bilateral striata. In each mouse, three sections at the following approximate coordinates were reconstructed (A-P distance from bregma): 1.7 mm (rostral, 1.1 mm (medial) and 0.15 mm (caudal). Three-channel tiles (488 nm, 561 nm and 637 nm lasers) were obtained in viral infection experiments.
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7

Imaging Intracellular Localization in 3T3-L1 Cells

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Undifferentiated and differentiated 3T3-L1 cells were grown on coverslips coated with collagen IV (Sigma-Aldrich). Serum-starved cells were fixed with 4% paraformaldehyde in PBS (pH 7.4) for 10 min and permeabilized with 0.2% Triton X-100 for 3 min at room temperature. After blocking with 5% donkey serum for 1 h, cells were stained overnight at 4°C with primary antibodies, followed by incubation with secondary antibody for 1 h at room temperature. In several experiments, cells before fixing were incubated with LysoTracker (0.4 μM) for 40 min at 37°C. Antifade solution was used for mounting cells on slides. Slides were examined with the help of the Axio Observer Z1 fluorescence microscope equipped with the Hamamatsu digital camera C10600/ORCA-R2 and AxioVision 4.8.1 program (Carl Zeiss, Thornwood, NY). Each scale bar is 5 μm. Each image shows a representative result of at least three independent experiments.
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8

Quantitative Cellular Dynamics under MV Treatment

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Cellular behavior in response to MVs treatment was observed with a wide-field digital imaging system (Zeiss Axio Observer Z1, Hamamatsu ORCA-ER camera and Axiovision software v. 4.8.1.0) equipped with an environmental chamber. Phase-contrast images were captured at 30 min intervals over a 72-h period, using a 20×/NA0.5 ph2 dry objective. After each 24-h period, the cells were fed fresh MVs. The cell morphology was quantified using ImageJ software (v. 1.46, National Institutes of Health, Bethesda, MD, USA). Quantification of cell morphology was obtained from at least three independent experiments.
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9

Quantifying Lung Metastasis in Mouse Model

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Lung sections stained with H&E (three sagittal sections separated by 15 μm, cut from deep within each lung) were visually examined for lung metastasis by a veterinary pathologist. Lung sections stained for PyMT expression were scanned using a Zeiss Axio Observer Z1 Inverted microscope with a Hamamatsu EMCCD C9100-13 Monochromo camera and 5×/0.16NA Phan-NeoFluar Phase objective using Zeiss AxioVision 4.8 software (5× magnification in a 5 × 10 tile on an automated stage). Image Pro Premier 9.0 imaging software was used to count the total number of PyMT-positive metastatic lung nodules per mouse and to measure the area of each nodule to determine their classification as either a micrometastasis (≤0.025 mm2) or a macrometastasis (>0.025 mm2).
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10

Bacterial Adhesion to Fibronectin-Coated Substrates

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To assess the adhesion phenotype of the bacterial strains, bacteria were incubated with Fn-coated substrates prepared as follows. Glass coverslips coated with a thin layer of gold were immersed overnight in an ethanol solution containing 1 mM 10% 16-mercaptododecahexanoic acid–90% 1-mercapto-1-undecanol (Sigma), rinsed with ethanol, and dried with N2. Substrates were then immersed for 30 min in a solution containing 10 mg ⋅ ml−1N-hydroxysuccinimide (NHS) and 25 mg ⋅ ml−1 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDC) (Sigma), rinsed 5 times with Ultrapure water (ELGA LabWater), incubated with 0.1 mg ⋅ ml−1 of Fn from bovine plasma (Sigma) for 1 h, and rinsed further with phosphate-buffered saline (PBS) buffer. Fn substrates were incubated at 37°C in 200-µl bacterial suspensions adjusted in Tris-buffered saline (TBS) buffer supplemented with 1 mM ZnCl2 to an OD600 of 0.3 to 0.4. After 2 h, the substrates were gently rinsed by 3 consecutive washes in TBS buffer supplemented with 1 mM ZnCl2 and directly imaged using an inverted optical microscope (Zeiss Axio Observer Z1) equipped with a Hamamatsu C10600 camera.
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