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13 protocols using exo fect

1

Antisense miR-155 Uptake in EVs

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Antisense miR-155–5p (αmiR) sequence (5’-/5Cy5/AACCC CUAUC ACGAU UAGCA UUAA-3’) and Control Oligo-1 miR (cmiR) (SBI) were submitted to Integrated DNA Technologies (Redwood City, CA), synthesized and labelled with Cy5 at the 5’ end. EVs were transfected with antisense miR-155 or Control Oligo-1 miRs with Exofect (SBI) following the manufacturer’s instructions. Transfected EVs were purified with ExoQuick-TC (SBI) and stored at −80 °C until use [Figure 1A].
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2

Efficient Decoration of EVs with TDNs

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A modified heat-shock protocol was used to anchor the TDNs on the surface of EVs. The RNP-loaded EVs were incubated with TDNs at the weight ratio of 1:3 (EVs: TDNs, the EVs were measured by protein amount) at 37°C for 1h, then rapidly left on ice for 1 h under gentle shaking condition. The TDNs decorated EVs were purified by ultracentrifugation at 100 000g for 70 min at 4°C. All the pellets were collected and stored at 4°C for further study. An AGE test in TAE (40 mM Tris-acetate, 1 mM EDTA) buffer was used to demonstrate the success of TDNs decoration. The decoration efficiency was measured after a modified heat-shock process for TDNs decoration. In brief, the resulting TDNs-EVs were precipitated down with Exo-Fect™ (SBI System Biosciences) and the undecorated DNA nanostructures were collected from the supernatant after ultracentrifugation. The concentration of free DNA and total input DNA were determined and the decoration efficiency was calculated through the equation below:
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3

Antisense miR-155 Uptake in EVs

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Antisense miR-155–5p (αmiR) sequence (5’-/5Cy5/AACCC CUAUC ACGAU UAGCA UUAA-3’) and Control Oligo-1 miR (cmiR) (SBI) were submitted to Integrated DNA Technologies (Redwood City, CA), synthesized and labelled with Cy5 at the 5’ end. EVs were transfected with antisense miR-155 or Control Oligo-1 miRs with Exofect (SBI) following the manufacturer’s instructions. Transfected EVs were purified with ExoQuick-TC (SBI) and stored at −80 °C until use [Figure 1A].
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4

Exosome Labeling and Uptake

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Exosomes were isolated from cell culture media using ExoQuick-TC according to the manufacturer’s instructions (System Biosciences, Palo Alto, CA, USA) and stored at −80 °C until use.
To examine the uptake of exosomes by cells, exosomes were first labeled using the ExoGlow™-protein EV labeling kit (System Bioscience). The cells were treated with the labeled exosomes for 24 h, fixed using paraformaldehyde (Sigma, St. Louis, MO, USA), and imaged using a confocal laser scanning microscope (Carl Zeiss, Oberkochen, Germany).
Transfection of the miR-NC or miR-205-5p mimics into exosomes was performed using Exo-Fect™ according to the manufacturer’s protocol (System Biosciences).
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5

Exosome-Mediated miRNA Delivery

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Exo-Fect (System Bioscience) was used to package miRNA into isolated exosomes according to the manufacturer’s protocol. Briefly, isolated exosomes from Huh-7 cell-free supernatant (5 mL) were re-suspended in 100 μL of 1× PBS and then the components, consisting of 10 μL of Exo-Fect solution, 20 μL of miR-192 or non-template control siRNA (siNTC) (20 pmol), 100 μL of 1× PBS, and 20 μL of purified exosomes, were mixed by inversion three times. The component mixture was incubated at 37°C in a shaker for 10 min and then immediately placed on ice. To stop the reaction, 30 μL of ExoQuick-TC reagents were added to the component mixture and mixed by inverting six times. miRNA-packaged exosomes were placed on ice for 30 min and then centrifuged for 3 min at 13,000 rpm. The supernatant was removed, and the packaged exosome pellet was re-suspended in 200 μL of 1× PBS.
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6

Labeling CDC-EVs with Fluorescent Dye

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CDC‐EVs were transfected with EV‐YF1 or EV‐YF1‐fluo (5′‐linked Rhodamine Red™‐X [NHS Ester], IDT) using Exo‐Fect (System Biosciences).
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7

Exosomal miR-494 Loading Protocol

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As mentioned above [21 (link)], we used Exo-Fect™ (System Biosciences, Palo Alto, USA) to load miR-494. First, miR-494 (100-300 pmol), exosomes (200 μg in 50 μL), and Exo-Fect were mixed and incubated at 37°C for 20 min (for the Control group, only miR-494 and exosomes were mixed without adding Exo-Fect), then ExoQuick-TC reagent (System Biosciences, Palo Alto, USA) was used to culture the mixture on ice for 20 min. Finally, exosomes/ExomiR-494 were centrifuged at 13,000 × g for 5 min to collect and resuspend in phosphate buffer saline (PBS, Gibco™, USA) for reverse transcription (qPCR).
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8

Tracking Extracellular Vesicle Uptake

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s.END1 EC-EVs were labeled with C. elegans cel-miR-39-3p transcript (Exiqon) using an exosomal transfection kit (Exo-Fect, System Bioscience) according to the manufacture’s instructions. EC-EVs were then washed by ultracentrifuging at 120,000 g for 120 minutes in 13 ml PBS. Labeled EC-EVs were injected into mice by tail vein injection at a concentration of 1 × 109 EVs, and tissues of interest harvested. Tissues were perfused with heparinized PBS (10 ml) through insertion of a 25-gauge needle into the left ventricle. Tissues and plasma were harvested and snap frozen for qPCR analysis; harvested tissues were mechanically homogenized. To determine the uptake of labeled EVs by resident splenic cell populations (splenic monocytes vs. splenic ECs) isolated spleens were dissociated and splenocytes were incubated with anti-CD31 –conjugated (clone MEC 13.3, BD Pharmingen) magnetic beads (sheep anti-rat IgG Dynabeads, Invitrogen) to isolate splenic ECs as previously described (70 (link)). The resultant supernatant containing unbound cells was enriched for monocyte populations using EasySep (Stemcell Technologies) as previously described (1 (link)). Isolated cells were lysed and prepared for miRNA RT-qPCR.
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9

Colostrum Exosome-Mediated siRNA Delivery

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Colostrum exosomes were loaded with siRNA using a chemical transfecting reagent, Exo-Fect™ (System Biosciences, Palo Alto, CA, USA). Briefly, exosomes (75 – 300 μg in 50 μl) were incubated with Exo-Fect and non-radioactive siRNA (0.5 – 10 μg) and a 32P-labeled siRNA tracer at 37 °C for 10 min. The resulting exosome complex was collected and the siRNA entrapment was determined.
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10

Exosomal microRNA Transfection Assay

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Exosomes isolated from HOK were transfected using Exo-fect (System Biosciences, Mountain View, CA, USA) as per manufacturer’s instructions. Briefly, 100 µg exosomes were transfected with 20 nM of v-miR or control mimics using 10 µL Exo-fect and incubated for 37°C for 10 min. Reaction was stopped by adding ExoQuick and exosomes were pelleted after 30 min by centrifuging at 17,000 × g/3 min. Exosomes were resuspended in 500 µL serum-free media and incubated with the recipient cells at two different concentrations (100 and 250 µL) overnight before performing functional assays.
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