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12 protocols using permafluor e

1

Synthesis and Characterization of [14C]PPI-1011

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PPI-1011 (1-O-hexadecyl-2-O-cis-4, 7, 10, 13, 16, 19-docosahexaenoyl-3-O-lipoyl glycerol) was synthesized at Laxai Life Sciences Pvt Ltd. using a previously described synthetic route (Wood et al., 2011a ). Structure was confirmed by mass spectrometry and NMR analysis. [14C]PPI-1011 was synthesized by RTI International using [14C]sodium cyanide to introduce a single [14C] label onto the first carbon of palmitoyl alcohol, which was linked to the sn1 position of the glycerol backbone. [14C]PPI-1011 had a specific activity of 70.2 μCi/mg and a radiochemical purity of 95.9%. Handling of this material was in accordance with US Nuclear Regulatory Commission (NRC), Pennsylvania Bureau of Radiation Protection regulations, Frontage QWBA final study protocol, and all applicable Frontage Standard Operating Procedures (SOP).
Ethanolamine and 2-methoxyEthanolamine were purchased from Sigma. Carbo-Sorb® E, PermaFluor® E+, Ultima Gold™, Hionic-Fluor, and Ultima-Flo™ M liquid scintillation cocktails were obtained from Perkin Elmer Life Sciences. Stopflow AQ liquid scintillation cocktails were purchased from AIM Research Company. Solvents used for chromatographic analysis were HPLC or ACS reagent grade and purchased from Fisher. All other reagents were of analytical or ACS reagent grade.
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2

Radiolabeled HMB Synthesis and Characterization

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HMB (CAS # 131-57-7, purity 98%, lot # 05928TH) was purchased from Sigma-Aldrich, Inc. (St. Louis, MO) and the identity was confirmed by nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS). [14C]HMB (lot# 433106–0748-A-20090223-JK, specific activity 74.8 mCi/mmol, 1mCi/mL, label on the unsubstituted phenyl ring) was from Moravek Biochemicals, Inc. (Brea, CA). The radiochemical purity of [14C]HMB was determined to be 99.1% by high performance liquid chromatography (HPLC) and liquid scintillation spectrometry (LSS).
Ultima Gold scintillation cocktail was purchased from Packard Instrument Company, Inc. (Meriden, CT). Alkamuls EL-620 was purchased from Rhodia (Cranbury, NJ). Methanol was purchased from VWR International, LLC (Radnor, PA). DHB, 2,2′-DHMB, THB, β-Glucuronidase from E. coli and H. pomatia were purchased from Sigma-Aldrich Company, Inc (St. Louis, MO). 2,4- DHMB was custom synthesized by Richman Chemical Custom Solutions (Gwynedd, PA). Carbo-Sorb E and Permafluor E+ were purchased from Perkin Elmer (Shelton, CT). Heparin was from Abraxis Pharmaceutical Products (Schaumburg, IL) and Euthasol was from Delmarva Laboratories, Inc. (Midlothian, VA). Chlorhexidine 2% was purchased from VetOne (Meridian, ID). All other reagents were purchased from commercial sources.
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3

Radiolabeled Carbohydrate Synthesis Protocol

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D-[1-14C] allose (37.2 mM 3% ethanol solution, 1.96 GBq/mmol) and D-[1-14C] glucose (0.654 mM 0.3% EtOH solution, 11.3 GBq/mmol) were obtained from Amersham Biosciences UK Ltd (Little Chalfont, Buckinghamshire, UK). Cold D-psicose, D-allose, and L-rhamnose isomerase immobilized beads were supplied by the Rare Sugar Research Center of Kagawa University (Miki, Kagawa, Japan). Carbo-Sorb® E and Permafluor® E+ were from PerkinElmer, Inc., (Waltham, MA, USA).
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4

Microbial Degradation of n-Alkanes and PAHs

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14C-hexadecane and 14C-naphthalene radiotracer assays were applied for all microcosms to monitor the microbial degradation rate of n-alkanes and PAHs in water samples, respectively, as described previously [29 ]. For each sample, 8 mL of water subsample was transferred to a headspace-free scintillation vial, and amended with 14C-hexadecane or 14C-naphthalene (American Radiolabel Chemicals; ARC). The unit of radioactivity per 8 mL sample was 1.76 nCi. Killed controls were amended with 2 mL 2 M NaOH solution prior to tracer addition. The incubation was also halted by adding 2 mL 2 M NaOH solution. Afterwards, 1 g of activated carbon (Sigma Aldrich, Burlington, MA, USA) was added to the water for absorbing the remaining 14C-hexadecane/14C-naphthalene. The water was then transferred to a 250 mL flask. A total of 5 mL H3PO4 (≥80% wt) was added to release the 14C-dissovoled inorganic carbon (DIC). The 14C-CO2 was trapped by Carbo-Sorb (Perkin Elmer, USA) in an acid digestion system as described [29 ]. The radioactivity measurements were performed with a Beckman LS-6500 liquid scintillation counter (Beckman, Fullerton, CA, USA) with scintillation cocktail (Permafluor® E+, Perkin Elmer, USA). The rate of 14C-hexadecane/naphthalene oxidation was calculated as described previously [29 ].
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5

Quantifying Tumor Glucose Uptake

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Cellular uptake of 14C-glucose can be used to evaluate the glucose-uptake capacity of tumor cells. Cells were cultured in 12-well plates, then detached, and washed twice. Subsequently, they were incubated in 500 µL of DMEM containing 2 µCi/mL of 14C-glucose for 1 h at 37°C. Then, the cells were washed twice with ice-cold PBS. Cell lysates were produced using 500 µL of 0.1 M NaOH. Then, the radioactivity of the whole-cell lysates was assayed using a scintillation counter (LS 6500; Beckman Coulter, Fullerton, CA, USA). These readouts were normalized to the corresponding protein amounts (Beyotime Institute of Biotechnology, Beijing, China). Experiments were carried out independently in triplicate.
For 14CO2-release assay, cells cultured in 100-mm dishes were placed in an airtight chamber. Five milliliters of DMEM containing 14C-glucose (2 μCi/mL) were added and the cells were incubated for 2 h at 37°C with constant airflow (5% CO2 and 95% air, 15 mL/min); 14CO2 was trapped using 16 mL of an amine-based absorber. Four milliliters of absorber-trapped 14CO2 were transferred to vials containing 12 mL of Permafluor® E+ (Perkin Elmer, Waltham, MA, USA) and radioactivity was counted using the liquid scintillation counter. The cell residue was used to determine protein content.
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6

Synthesis and Characterization of 14C-Amenamevir

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14C-amenamevir (Fig. 1, specific activity 2.23 MBq/mg and radiochemical purity > 99%) was synthesized at EaglePicher Pharmaceutical Services (Lenexa, KS, USA). Unlabeled amenamevir, its solid dispersion (amenamevir:hydroxypropylmethylcellulose 2910 [TC-5 E] = 1:3), internal standard (AS1709867-00, D6-amenamevir), and metabolites R1 and R5 were supplied by Astellas Pharma (Tokyo, Japan). All organic solvents for high-performance liquid chromatography (HPLC) were of HPLC grade. Carbon dioxide absorbent (Carbo-Sorb E) and scintillation cocktails (Hionic-Fluor, PermaFluor E+, and Pico-Fluor 40) were purchased from PerkinElmer (Waltham, MA, USA). All other reagents were of analytical grade.
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7

Radiolabeled BEH-TEBP Protocol for Phthalate Analysis

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[14C]-radiolabeled BEH-TEBP (carboxy-labeled; Figure 1) was purchased from Moravek Biochemicals, Inc. (La Brea, CA). [14C]-BEH-TEBP had a radiochemical purity of >99.4% with a specific activity of 60 mCi/mmol; chemical purity was determined to be >99% as compared to a BEH-TEBP reference standard (Accustandard, Inc., New Haven, CT). [14C]-BEH-TEBP was diluted in Toluene to a stock concentration of 0.5 mCi/mL. Scintillation cocktails were obtained from MP Biomedicals (Ecolume; Santa Ana, CA) or Perkin-Elmer (Ultima-Flo M and PermaFluor E+; Torrance, CA). Corn oil (Mazola, ACH Food Companies, Inc., Memphis, TN) was purchased locally. Toluene, acetonitrile, ethyl acetate, and ethyl alcohol were purchased from Sigma-Aldrich (St. Louis, MO). Mono (2-ethylhexyl) tetrabromophthalate (TBMEHP) standard was generously provided by Dr. Heather Stapleton (Duke University, Durham NC). Tetrabromophthalic acid was procured from BOC Biosciences (Shirley, NY) and was >95% pure. All other reagents used in these studies were high performance liquid chromatography (HPLC) or analytical grade.
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8

Chromatographic analysis of organic compounds

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Trifluoroacetic acid (TFA), dimethylsulfoxide (DMSO), and acetonitrile used for chromatographic analysis were high-performance liquid chromatography (HPLC) grade or above and were purchased from Thermo Fisher (Waltham, MA, USA) or another commercial supplier. Combustaid, Carbo-Sorb E absorber, PermaFluor E, Ultima Gold, and Ultima-Flo M scintillation fluids were obtained from PerkinElmer (Waltham, MA, USA). All other reagents were analytical or American Chemical Society reagent grade.
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9

Quantifying Plant and Soil Carbon

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Dry plant and soil material was ground and 14C in samples quantified by liquid scintillation counting (LSC) of 14CO2 produced by dry combustion (Packard 307 sample oxidizer; 6 ml Carbosorb E mixed with 12 ml Permafluor E, Perkin Elmer).
Soil microbial C was determined by chloroform fumigation‐extraction (Vance, Brookes, & Jenkinson, 1987), with some modifications (Supporting Information). For L. alpina, 14C in microbial extracts was below the detection limit, most likely because of the lower amount of 14C applied during pulse‐labelling.
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10

Radioactivity Assessment of Solid and Liquid Samples

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Total radioactivity of the samples was assessed using a liquid scintillation counter (Tri-Carb 2800TR, Perkin Elmer). Sample aliquots were mixed with scintillation cocktail prior to the measurements as described above. For analysis of the radioactivity accumulated in the solids, the biomass fractions of the samples were combusted for 1.5 min in a 307 Perkin Elmer Sample Oxidizer. The resulting 14 CO 2 was absorbed by Carbo-Sorb® E (Perkin Elmer) and LSC cocktail (Permafluor® E+, Perkin Elmer) was added. The radioactivity was then assessed by liquid scintillation counting. Radioactive supernatant samples were analyzed using a HPLC 1200 Series (Agilent Technologies) including a diode array detector (DAD) coupled to a subsequent liquid scintillation counter (Ramona Star, Raytest). The DAD signal was recorded at 285 nm (4 nm bandwidth), which is close to the maximum of an absorption peak between 250 and 300 nm in the absorption spectra of both SMX and SDZ. 41, 42 An identical column and gradient program and identical eluent mixtures and injection volumes for chromatographic separation as described for the LC-HRMS/MS measurements above were used.
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