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5 protocols using pcmv6 an gfp

1

Plasmid Constructs for Pur-α and DUSP8 Studies

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The plasmid-expressing 3xFlag-tagged human Pur-α cDNA (NCBI accession number: NM_008989) was generated by subcloning Pur-α cDNA into the vector pCMV6-AN-3DDK (OriGene). The plasmid encoding Myc-tagged mouse DUSP8 was generated by cloning the Dusp8 cDNA into the vector pMTSM-Myc (6 (link)). The plasmid expressing DUSP8 (C246S) phosphatase–dead mutant was generated from the Myc-DUSP8 plasmid by mutating cysteine-246 to serine using PCR-based site-directed mutagenesis. The plasmids expressing YFP-fused DUSP8 and CFP-fused Pur-α proteins were constructed by subcloning the Dusp8 cDNA and Pur-α cDNA from the Myc-Dusp8 plasmid and 3xFlag-Pur-α plasmid into the pCMV6-AC-Yfp vector (OriGene) and pCMV6-AN-Cfp vector (OriGene), respectively. The plasmid expressing GFP-fused Pur-α protein was generated by subcloning the human Pur-α cDNA into the vector pCMV6-AN-Gfp (OriGene). The plasmids encoding Pur-α (S217A) and Pur-α (T183A) mutant proteins were generated by mutating the indicated amino acid residues in the 3xFlag-Pur-α or GFP-Pur-α plasmid.
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2

Overexpression of PRR14L in HEK293F

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The HEK293F cell line (Thermo Fisher Scientific, Waltham, MA, USA) was grown in DMEM plus 10% fetal calf serum and transfected using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA). Full length PRR14L (Genbank accession: NM_173566) was synthesized (Genescript, New Jersey, USA) and transferred to pCMV6-Entry (C-terminal Myc-DDK tags; Origene Technologies Inc., Maryland, USA). Wildtype and mutant PRR14L were then transferred to pCMV6-AN-Myc-DDK, pCMV6-AC-GFP and pCMV6-AN-GFP (Origene Technologies Inc, Maryland, USA).
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3

Generating Cav3.1 channel constructs

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Wild-type human Cav3.1b cDNA was donated by T. Snutch (Vancouver, BC, Canada) (GenBank accession number AF134986.1), HA-Cav3.1 and Kir2.1 cDNA from E. Bourinet (Institut de Génomique Fonctionnelle, Montpellier, FR), and CaM cDNAs by J. Adelman (Vollum Institute, OR, USA). GFP-Cav3.1 and GFP-αCaMKII were subcloned into a GFP mammalian vector (pCMV6-AN-GFP) (OriGene Technologies, Rockville, MD, USA) and mKate-CaM prepared from a pmKate2-N mammalian expression vector (Axxora, Farmingdale, NY, USA). CaMKIIN was amplified from a mouse hippocampal cDNA library (RIKEN) and cloned into the pcDNA3.1 vector (Addgene, Cambridge, MA, USA) [24 (link)]. To create a deletion of the C-terminus, PCR with specific primers was performed on Cav3.1 outside of the C-terminus region, followed by sequencing and subcloning into the pCMV6-AN-GFP vector (OriGene Technologies, Rockville, MD, USA) or the pcDNA3.1 vector (Addgene, Cambridge, MA, USA) and sequenced for final confirmation. The GFP and mKate tags were attached to the N-terminal regions of target proteins. To create the Cav3.1 pore mutant, a single point mutation PCR was performed on E354K in the pore region with the primer sequences: 5′-ACAGGTCGTTGAGCCGC-3′, followed by sequencing and subcloning into the pcDNA3.1 vector (Addgene, Cambridge, MA, USA) and sequenced for final confirmation.
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4

ABCA1 and OSBPL7 Protein Interactions

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ABCA1-Flag construct was kindly provided by Dr. Michael Fitzgerald, Harvard University. OSBPL7-V5 construct (pcDNA3.1-V5-ORP7) was purchased from Addgene. Mammalian expression vectors PCMV6-AN-GFP and pCMV6-AC-3DDK, from Origene, were used as negative controls. HEK293 cells were transiently co-transfected with either one of the following plasmid combinations: (1) ABCA1-Flag + OSBPL7-V5; (2) ABCA1-Flag + PCMV6-AN-GFP; or (3) OSBPL7-V5 + pCMV6-AC-3DDK using Fugene 6 transfection reagent (Promega) following the manufacturer’s instructions. 48 h after transfection, cells were lysed with 1 ml immunoprecipitation buffer (1% Triton X-100, 50 mM Tris-Cl pH 7.0, 150 mM NaCl) supplemented with protease inhibitor cocktail (Roche). The lysates were cleared by centrifugation and equal amounts of total proteins from each supernatant were incubated overnight at 4 °C with 30 µl of anti-Flag M2 Affinity gel (Sigma Aldrich). The beads were pelleted by centrifugation and washed 5 times with 1 ml of immunoprecipitation buffer. Immunoprecipitated proteins were eluted by incubating the beads with 50 µl of 2× sample buffer for 15 min at 56 °C. The presence of ABCA1, OSBPL7-V5 in the lysates and eluates was verified by western blot as described above.
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5

Overexpression of PRR14L in HEK293F

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The HEK293F cell line (Thermo Fisher Scientific, Waltham, MA, USA) was grown in DMEM plus 10% fetal calf serum and transfected using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA). Full length PRR14L (Genbank accession: NM_173566) was synthesized (Genescript, New Jersey, USA) and transferred to pCMV6-Entry (C-terminal Myc-DDK tags; Origene Technologies Inc., Maryland, USA). Wildtype and mutant PRR14L were then transferred to pCMV6-AN-Myc-DDK, pCMV6-AC-GFP and pCMV6-AN-GFP (Origene Technologies Inc, Maryland, USA).
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