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14 protocols using flex station 2 microplate reader

1

Cotransfection of miR-217 and EGFP Plasmids

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Insect High Five cells (Invitrogen) were cultured at 28°C in Express Five serum-free medium (SFM, Invitrogen) containing L-glutamine (Invitrogen). The cells were cotransfected with the EGFP, EGFP-Tube, or EGFP-ΔTube plasmid and the synthesized miR-217 (miR-217-mimic) using the Cellfectin transfection reagent (Invitrogen) according to the protocol of the manufacturer. The concentrations of miR-217-mimic and the plasmid were 200 nM/well and 400 ng/well, respectively. As a control, the control miRNA was included in the cotransfection. All the miRNAs were synthesized by Shanghai GenePharma Co., Ltd. (Shanghai, China). At 48 h after cotransfection, the EGFP fluorescence of the cells was measured by a Flex Station II microplate reader (Molecular Devices, USA) at 490/510 nm of excitation/emission (Ex/Em).
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2

Measuring Mud Crab Oxidative Stress

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The ROS levels in mud crabs were detected by a reactive oxygen species (ROS) assay kit (Beyotime, China) according to the manufacturer’s instructions. Briefly, mud crab hemocytes were harvested and resuspended in ice-cold acid citrate dextrose (ACD) anticoagulant buffer (1.32% sodium citrate, 0.48% citric acid, and 1.47% glucose) supplemented with 0.1% DCFH-DA (2,7-dichlorodihydrofluorescein diacetate) at 37°C for 20 min. Then, the cells were washed three times with ACD anticoagulant buffer. Finally, a Flex Station II microplate reader (Molecular Devices, USA) was used to examine the ROS levels at excitation/emission (Ex/Em) of 488/525 nm, pictures were captured by fluorescence microscopy (Carl Zeiss, German), and the cell numbers of each sample were counted with an optical microscope and hemacytometer.
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3

Fluorescence-Based Aptamer-Target Interactions

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These measurements were performed in the original selection buffer (Corning PBS buffer, cat no. 21-040-CV, NaCl 154 mM, Na2PO4 5.6 mM, and KH2PO4 1.058 mM, pH 7.3-7.5) with or without MgCl2. Aptamers were first heated in assay buffer at 95 °C for 5 min and cooled to room temperature. For ThT concentration dependence experiments (Fig. S5), the ThT concentrations were varied while the aptamer concentration was held constant (final concentration, 400 nM) in PBS with 2 mM or sans MgCl2 (Fig. S6a). The, ThT solutions were mixed with equal volumes of aptamer solution and incubated at room temperature in the dark for 40 min prior to determining fluorescence. For target displacement experiments (Fig. 5), dopamine or serotonin were included in solutions containing ThT (final concentration 4 μM) and the respective aptamer (Fig. S6b.) Measurements were conducted in triplicate in 96-well black plates using a Flexstation II microplate reader (Molecular Devices, San Jose, CA) to record ThT fluorescence spectra at excitation and emission wavelengths of 425 nm and 490 nm, respectively. To compare the degree of ThT displacement at different dopamine and Mg2+ concentrations, relative fluorescence was converted to dye displacement % by normalizing to the maximum ThT fluorescence intensity at each MgCl2 concentration.
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4

Monitoring EGFP-STAT Overexpression in Insect Cells

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Insect High Five cells (Invitrogen, USA) were cultured at 28 °C in Express Five serum-free medium (Invitrogen) containing l-glutamine (Invitrogen). When the cells reached 70–80% confluence, they were transfected with 6 μg of EGFP, EGFP-STAT, EGFP-∆STAT-9041, or EGFP-∆STAT-9850. Simultaneously, the cells were transfected with 300 nM of synthesized miR-9041, synthesized miR-9850, or synthesized control miRNA. All the miRNAs were synthesized by Shanghai Gene Pharma Co., Ltd. (Shanghai, China). The transfection reactions were performed in triplicate with Cellfectin transfection reagent (Invitrogen) according to the manufacturer’s protocol. After 12 h of incubation, the transfected cells were seeded into 96-well plates at a concentration of 2.0 × 104 cells per well. At 48 h after transfection, the fluorescence of the cells was examined with a Flex Station II microplate reader (Molecular Devices, USA) at 490/510 nm for excitation and emission (Ex/Em), respectively. The fluorescence values were corrected by subtracting the autofluorescence of cells that did not express EGFP. All the experiments were biologically replicated three times.
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5

Investigating miR-7 and CLTC1 Interaction

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To evaluate the interaction between miR-7 and shrimp CLTC1 gene, fluorescence assays were performed in insect High Five cells. The shrimp CLTC1 and the enhanced green fluorescent protein (EGFP) genes were cloned into a pIZ/EGFP V5-His vector (Invitrogen, USA) using gene-specific primers (5′- AATTC CGCCTGGCTCAGAACT-3′ and 5′-GTAGTACAGTTCAATGTTGGCAAC-3′) to make EGFP-CLTC1 construct. As a control, the seed sequence of shrimp CLTC1 was randomly mutated and cloned into pIZ/EGFP V5-His vector using primers 5′- AATTCCGCCTGGCTCAGAACT-3′ and 5′- TCTGGTCCAGGGTTAACGCCTT A -3′ to construct EGFP-CLTC1-mutant. When the High Five cells were at about 70% confluence, they were cotransfected with the miR-1 precursor (30 nM) and a plasmid containing the EGFP gene or EGFP-CLTC1 or EGFP-CLTC1-mutant (2 µg/mL) using Cellfectin transfection reagent according to the manufacturer's protocol (Invitrogen, USA). At 48 h after transfection, the fluorescence of the cells was monitored with a Flex Station II microplate reader (Molecular Devices, USA) at 490 and 510 nm for excitation and emission. The fluorescence values were corrected by subtracting the autofluorescence of cells not expressing EGFP. All the experiments were repeated biologically three times.
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6

Quantifying miRNA-mRNA Interactions in Insect Cells

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Cell culture, transfection and fluorescence assays were carried out as described previously (19 (link)). Insect High Five cells (Invitrogen, USA) were cultured in a 96-well plate with Express Five serum-free medium (SFM) (Invitrogen, USA) containing L-glutamine (Invitrogen, USA) at 27°C. The cells in each well were co-transfected with 0.2 μg of the constructed plasmids and 100 nM of miR-1000 or miR-1000-scrambled with Cellfectin II Reagent (Invitrogen, USA) according to the manufacturer's instructions. All the miRNAs were synthesized by Shanghai GenePharma (Shanghai, China). At 48 h after the co-transfection, the fluorescence intensity of cells was determined using a Flex Station II microplate reader (Molecular Devices, USA) at 490/510 nm excitation/emission (Ex/Em). Based on the fluorescence values of the cells co-transfected with miR-1000 and EGFP-wsv191-3′UTR, EGFP-wsv407-3′UTR or EGFP-wsv024-3′UTR, the relative fluorescence intensity was calculated. This assay was biologically repeated for three times.
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7

Quantifying HA-β2AR Expression in HEK293 Cells

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For BRET and Surefire ERK1/2 phosphorylation assays, the equivalence of HA-β2AR expression in parental HEK293 and CRISPR βArr1/2 KO cells was determined by ELISA. For this assay, transfected cells in poly-D-lysine-coated, 96-well plates were fixed for 10 min in DPBS containing 3.7% formaldehyde. Cells were then washed three times with wash buffer (0.5% BSA in DPBS) and incubated for 1 hour with a 1:2000 dilution of HRP-conjugated anti-HA IgG in wash buffer. After three additional washes, the number of cells was measured by incubation for 30 min with 5 µM Vybrant DyeCycle orange stain in wash buffer. Cells were again washed three times with DPBS, after which fluorescence was read at 563 nm with 519 nm excitation using a FlexStationII microplate reader (Molecular Devices; San Jose, CA). HRP activity, reflecting receptor number, was detected by incubating cells with o-phenylenediamine dihydrochloride. The addition of 0.6 M HCl stopped the reaction and the absorbance was read at 492 nm using a Tecan Infinite M200 Pro multifunction microplate reader (Tecan Inc.; Zurich, Switzerland).
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8

Mud Crab Hemocyte ROS Measurement

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5 mL hemolymph from three randomly chosen mud crabs per group were drawn into tubes containing ACD anticoagulant buffer, and then centrifuged immediately at 800 ×g for 20 min at 4°C to isolate the hemocytes. Next, flow cytometry method was used to measure cellular ROS level with a ROS Assay Kit (Beyotime Biotechnology, China). For mitochondrial ROS measurement, the ROS intensity was analyzed by MitoSOX Red Mitochondrial Superoxide Indicator (Invitrogen, USA). The fluorescence in hemocytes was observed using an inverted fluorescence microscope (Leica, Germany) and measured by a Flex Station II microplate reader (Molecular Devices, USA).
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9

Drosophila S2 Cell Transfection Assay

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The Drosophila Schneider 2 (S2) cells (Invitrogen) were cultured in Express Five serum-free medium (SFM) (Invitrogen) at 27ºC. The EGFP-PDCD6 or EGFP-ΔPDCD6 plasmid (100 ng/well) and the synthesized miR-9875 (miR-9875-scrambled) (50 nM/well) were co-transfected into S2 cells using the Cellfectin II Reagent (Invitrogen, USA). After 48 h of co-transfection, the EGFP fluorescence of S2 cells was measured by a Flex Station II microplate reader (Molecular Devices, USA) at 490/510 nm of excitation/emission (Ex/Em).
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10

Calcium Signaling Assay for CXCR1/2 Inhibitors

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Human Embryonic Kidney 293 (HEK293) cells stably expressing Gα16 and CXCR1 or CXCR2 were seeded onto 96-well plates and incubated for 24 h. Cells were loaded with 2 μmol L−1 Fluo-4 AM in Hanks balanced salt solution (HBSS, containing KCl 5.4 mmol L−1, Na2HPO4 0.3 mmol L−1, KH2PO4 0.4 mmol L−1, NaHCO3 4.2 mmol L−1, CaCl2 1.3 mmol L−1, MgCl2 0.5 mmol L−1, Mg2SO4 0.6 mmol L−1, NaCl 137 mmol L−1, BSA 5 g L−1, glucose 5.6 mmol L−1, and sulfinpyrazone 250 μmol L−1, at pH 7.4) at 37 °C for 45 min. The excess dye was removed and 50 μL of the HBSS containing test compounds was added. After incubation at room temperature for 10 min, 25 μL HBSS containing IL-8 was dispensed into the well using a FlexStation II microplate reader (Molecular Devices, Sunnyvale, CA, USA) and the intracellular calcium change was recorded with an excitation wavelength of 485 nm and emission wavelength of 525 nm. The half maximal inhibitory concentrations (IC50) of compounds were determined using the “Analyze Data” “XY analyses” “Nonlinear regression (curve fit)” protocol implanted in GraphPad Prism software by constructing their dose–response curves, where the x axis is the log value of concentration and the y axis is the response value (for the curves of each compound, see Table S1). Each experiment was repeated at least three times.
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