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11 protocols using methanol

1

Quantification of Arecoline in Saliva Samples

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Saliva samples were cold centrifuged at 402 ×g (3000 rpm) and decanted into fresh tubes for snap freezing in liquid nitrogen and stored at −20°C. Arecoline level quantification was done using high-performance LC-MS/MS method, using following materials: AB SCIEX API 4000™ LC-MS/MS System, Foster City, CA/Concord, Ontario, Canada, Arecoline hydrochloride, Arecoline hydrobromide and Triethylamine from Sigma-Aldrich (Germany), HPLC grade – Acetonitrile, Methanol and Water and Research grade sodium hydrogen phosphate from Spectrochem Pvt., Ltd. (India). A procedure based on LC-MS/MS was used for arecoline quantification. Liquid/liquid extraction with chloroform/isopropanol (95:5 v/v) was used for extraction procedure.
Chromatography was performed on a C8 reversed-phase column using a gradient of 50-mM ammonium formate, pH 5.0 and acetonitrile as a mobile phase at a flow rate of 0.5 mL/min. Separated analytes were determined by electrospray ionization MS/MS in the positive ion mode using multiple reaction monitoring.
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2

Standard β-N-oxalyl-2,3-diaminopropionic acid protocol

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Standard β-N-oxalyl-2,3-diaminopropionic acid was supplied by Dr S.L.N. Rao from Lathyrus Technologies, Hyderabad, India. L-1, 2-diaminopropionic acid (L-1, 2-DAPA) was a gift from Advanced Laboratory for Plant Genetic Engineering, Indian Institute of Technology, Kharagpur, India. Analytical grade n-Butanol, Acetic acid, Glycerol, Ethyl acetate, Formic acid from Fischer Scientific, MA, USA and HPLC grade Acetonitrile, Isopropanol, Methanol from Spectrochem, Mumbai, India were used. All solutions were prepared with water purified with a Milli-Q system.
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3

Biophysical Characterization of Casein Micelles

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Casein
micelles (CMs) were
purchased from TCI Chemicals (Japan) and used as received without
further purification. The used fatty acids for this study were purchased
from Sigma-Aldrich. 4-(Dicyanomethylene)-2-methyl-6-(4-dimethylaminostyryl)-4H-pyran (DCM) and 8-anilino-1-naphthalenesulfonic acid magnesium(II)
salt hydrate (ANS) were purchased from Exciton and TCI Chemicals (Japan),
respectively. NaCl (analytical grade, Merck, India) and methanol (UV
spectroscopic grade, Spectrochem, India) and all of the other chemicals
were of analytical reagent (AR) grade. Ultrapure Milli-Q water was
used in the study. All of the solutions were prepared in 5 mM sodium
phosphate buffer of pH 7.4 (±0.1). The pH was measured with a
precalibrated EUTECH pH 510 ion pH meter.
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4

Synthesis and Characterization of Isoproterenol Hydrochloride

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The samples of isoproterenol hydrochloride obtained from different final step batches, reference standard of isoproterenol hydrochloride (purity 99.9%) and the starting material, 1-(3,4-bis(benzyloxy)phenyl)-2-(isopropylamino)ethanone hydrochloride (2) used in the synthesis, were provided by Chemical Research Division, Micro Labs Ltd. (Bangalore, India). The catalyst, Pd-C (50% wet), was acquired from Monarch Catalyst Private Limited (Mumbai, India). HPLC grade acetonitrile and methanol were purchased from Spectrochem Pvt Ltd. (Bangalore, India), and formic acid and trifluoroacetic acid were purchased from Sigma-Aldrich (Bangalore, India). The commercial grade ethyl acetate (EtOAc) and isopropyl alcohol (IPA) were procured from Taiwan Fieldrich Corporation (Taipei, China). Purified water by Millipore Milli-Q Plus Purification System (Bradford, PA, USA) was used during the course of experimental studies. CD3OD was purchased from Cambridge Isotope Laboratories, Inc. (Andover, MA, USA). Potassium bromide used in Fourier transform infrared spectroscopy (FT-IR) was purchased from Merck KGaA (Darmstadt, Germany). TLC plates (60 F254) procured from Merck (Delhi, India) was used to check the progress of reaction.
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5

Sildenafil Citrate Analytical Protocol

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Sildenafil citrate was donated by Ajanta Pharmaceuticals pvt. ltd. All the reagent and chemical used were of AR analytical & HPLC grade. Methanol (Spectrochem) and water (Lobachem) used were of HPLC grade.
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6

Synthesis of Colloidal Nanocrystals

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Cesium
carbonate (Cs2CO3), lead bromide (PbBr2), 1-octadecene(ODE), oleic acid
(OA), and oleylamine (OLAM) were purchased from Sigma-Aldrich and
used without any further purification. Tetrachloroauric acid (HAuCl4·3H2O) was purchased from Sigma-Aldrich. Sodium
borohydride (NaBH4), sodium hydroxide (NaOH), tetraoctyl
ammonium bromide (TOABr), and 2-phenylethanethiol (PhC2H4SH, 99%) were purchased from Merck India Ltd. Methyl
acetate (MeOAC, Merck) was used during the purification of the nanocrystals.
Solvents like toluene, ethanol, methanol, acetonitrile, and dichloromethane
were obtained from Spectrochem. toluene (Spectrochem) was used for
all spectroscopic experiments, including the characterization of the
nanocrystals.
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7

Berbamine-based Nanomedicine Formulation

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Berbamine (BBM), Mitomycin C, Pluronic F-127, poly (ethylene glycol)-10,000 (PEG – 10,000), Rhodamine 123, Tween-80, propidium iodide (PI), 6-coumarin, protease inhibitor cocktail, sodium dodecyl sulphate (SDS), glycine, 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyl tetrazolium bromide (MTT), D-α-Tocopherol poly (ethylene glycol) 1000 succinate (TPGS), bradford reagent, triethyl amine (TEA), crystal violet, gelatin, brilliant blue G, p-coumaric acid and luminol were procured from Sigma-Aldrich (St. Louis, MO). Glycerylmonooleate (GMO) was purchased from Eastman (Memphis, TN). Sodium chloride was procured from MP biomedical (Cedex, France). Acetonitrile and methanol were obtained from Spectrochem, Pvt. Ltd. (Mumbai, India). Dimethyl sulphoxide, ammonium acetate and acetic acid were obtained from Merck, India Pvt. Ltd. (Mumbai, India). Tris base was purchased from Promega (Promega Corporation, Madison, Wisconsin). All other chemicals used were purchased from Sigma-Aldrich (St. Louis, MO) and used without further purification.
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8

Synthesis of Lanthanide-Doped Upconversion Nanoparticles

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All of the chemicals were utilized without
additional purification. Y(NO3)3·6H2O (99.99%), Yb(NO3)3·6H2O (99.99%), Er(NO3)3·6H2O (99.99%),
diethylene glycol, poly(acrylic acid) (PAA), and ethylenediamine (reagent,
99%) were purchased from Sigma-Aldrich. Oleic acid (90%, technical
grade), 1-octadecene (90%, technical grade), and hydrochloric acid
(HCl, analytical reagent 35–38%) were purchased from Alfa Aesar.
Rhodamine-B (RhB, 95%) and hydrazine hydrate 80 wt% solution in H2O were purchased from Loba Chemie Pvt. Ltd. Ammonium fluoride
(NH4F, 99%), sodium hydroxide (NaOH, 97%), cyclohexane
(C6H12 99%), ethanol (C2H5OH, analytical reagent 99%), and methanol (CH4OH, analytical
reagent 99%) were purchased from Spectrochem Pvt. Ltd. Double distilled
water was utilized to prepare all of the aqueous solutions. Aqueous
solutions of Sn2+, Hg2+, Co2+, Mg2+, Ni2+, Ca2+, Zn2+, Co2+, Cd2+, Na+, K+, and Cs+ were made from the corresponding halide salts.
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9

Quantitative Analysis of Fatty Acids

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MTX, HSA (fatty acid-free), and FA were purchased
from Sigma-Aldrich and Himedia and used as received. Methanol (UV
spectroscopic grade) and NaOH [analytical reagent (AR) grade] were
purchased from Spectrochem, India, and Merck, India, respectively,
and all other chemicals were of AR grade. Ultrapure Milli-Q water
was used throughout the study. All solutions were prepared in 5 mM
sodium phosphate buffer of pH 7.4 (±0.1). The pH measurements
were made with a precalibrated EUTECH pH 510 ion pH meter.
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10

Silk Cocoon-Derived Biomaterials Characterization

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Domesticated B. mori silk cocoons were obtained from a local farmer
based in Palakkad, Kerala, India. Lithium bromide, sodium carbonate,
formic acid (≥96%), sodium azide, dialysis bag (molecular weight
cut-off, 12–14 kDa), sodium hydroxide, paraformaldehyde, and
protease (type XIV from Streptomyces griseus, ≥3.5 units/mg) were purchased from Sigma-Aldrich, India.
1,1,1,3,3,3-Hexafluoro-2-isopropanol (98%) and methanol were purchased
from Spectrochem, India. Dulbecco’s modified Eagle’s
medium (DMEM), fetal bovine serum, penicillin–streptomycin,
trypsin, Alamar blue, Hoechst, and rhodamine-phalloidin were bought
from Thermo Fisher, India. The MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium)
reagent and phosphate-buffered saline (PBS) powder were obtained from
Hi-Media, India. L929 (mouse subcutaneous connective fibroblasts)
cells were purchased from American Type Culture Collection, USA, and
SIRC (Statens Serum Institut Rabbit Cornea) cells were obtained from
National Centre for Cell Science, Pune, India.
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