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9 protocols using ab187048

1

Shionone modulates inflammatory response

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Antibodies used for this study were shown below: Arg1 (93668, CST), CD16/CD32 (ab228971, Abcam), CD26 (ab187048, Abcam), ECM1 (ab126629, Abcam), iNOS (ab178945, Abcam), p-NF-κB (3033, CST), NF-κB (8242, CST), p-STAT5 (ab98338, Abcam), and STAT5 (ab230670, Abcam). Elisa kits for the detection of pro-inflammatory factors IL-6 (ZC-36404), IL-12 (ZC-36323), IL-1β (ZC-36391), TNF-α (ZC-37624), and anti-inflammatory factors IL-10 (ZC-36379), TGF-β (ZC-37644) purchased from ZCIBIO Technology Co., Ltd. Shionone (S823560, purity ≥ 98%) was purchased from Macklin Inc.
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2

Protein Expression Analysis Protocol

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Cells were collected and lysed with ice-cold RIPA lysis buffer containing protease inhibitor cocktail (Roche, Germany). The lysates were separated by SDS-PAGE and then transferred onto PVDF membranes (Bio-Rad). After blocking with 5% BSA, the membranes were incubated with primary antibodies against CD26 (1: 1000, ab187048, Abcam), Col1 (1: 500, sc-8784, Santa Cruz), and GAPDH (1: 2000, #2118, CST) overnight at 4°C. After incubation of the membranes with horseradish peroxidase (HRP)-conjugated secondary antibodies (Santa Cruz), the blots were finally visualized by enhanced chemiluminescence (Bio-Rad).
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3

Immunofluorescence Staining of CD26

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Cells were inoculated on glass coverslips, fixed with 4% paraformaldehyde, and washed with PBS. Cells were blocked with 3% BSA for 30 min at room temperature and then incubated with a primary antibody against CD26 (1: 1000, ab187048, Abcam) overnight. Subsequently, the cells were incubated with the secondary antibody and DAPI nuclear staining. A confocal microscope or Zeiss fluorescence microscope was used to observe the immunofluorescence and for photography.
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4

Skin Tissue Analysis: Collagen and CD26

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Normal and wounded mouse skin tissues were harvested and fixed overnight with 4% paraformaldehyde. Then, the tissue was washed, dehydrated, and embedded in paraffin. Next, 4-μm tissue sections were prepared for Masson trichrome staining (Sigma-Aldrich) and immunohistochemical staining (IHC) according to well-established protocols. Masson trichrome staining was used to analyze total collagen accumulation according to the manufacturer’s instructions. For IHC staining, after deparaffinization, rehydration, and antigen retrieval (sodium citrate buffer, pH 6.0), the samples were incubated with CD26 primary antibody (1: 1000, ab187048, Abcam) and corresponding secondary antibodies (Maxim, China) as described previously [15 (link)]. The negative controls group underwent incubation without primary CD26 antibody.
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5

Immunohistochemical Analysis of Mouse Mammary Gland

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The fourth mouse mammary gland of eight-weeks-old C57BL/6J mice were collected with skin and fixed with 10% buffered formalin. After embedding in paraffin, the cross-sections of the tissue were prepared and used for H&E staining and immunohistochemistry. Immunohistochemistry was performed by the Pathology Solid Tumor Core at City of Hope using Ventana Discovery Ultra IHC Auto Stainer (Roche Diagnostics, Indianapolis, IN, United States). Heat-mediated antigen retrieval was performed using Cell Conditioning Buffer 1 (Roche Diagnostics; pH 8.5) for an hour. Antibodies used for the immunostaining included: ERα rabbit polyclonal antibody (06–935, Millipore Sigma; 1:400), anti-PDGFRα rabbit monoclonal antibody (ab134123, Abcam, Cambridge, United Kingdom; 1:50), and anti-DPP4 rabbit monoclonal antibody (ab187048, Abcam; 1:500). Images were captured on the Zeiss Observer II (Carl Zeiss, Oberkochen, Germany; for H&E staining), VENTANA iScan HT (Roche Diagnostics; for PDGFRα and DPP4 immunohistochemistry) or Nano Zoomer S360 (HAMAMATSU PHOTONICS, Shizuoka, Japan; for ERα immunohistochemistry).
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6

Immunohistochemical Analysis of Protein Targets

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Paraffin sections were dewaxed, hydrated and repaired with high-pressure antigen heat. The sections were sealed and incubated with antibody (Caspase-3:Proteintech,19677-1-AP,1:200; Bax: BOSTER,BA0315-1,1:200; FGFR1:Cell Signaling Technology,#9740,1:500; SIRT3:affinity: AF5135, 1:100; DPP-4: Abcam, ab187048, 1:2000; TGF-β1, Abcam, ab50036,1:200) at 4°C overnight, washed, incubated with secondary antibody at 37°C for 1 h, and washed for DAB color development. Six fields of view were randomly selected from each section under the microscope and saved by video; the macro program for positive expression was set up using ImageJ software to analyze the expression of target proteins in different groups under the same conditions.
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7

Immunofluorescence Analysis of Renal Cells

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Kidney slides were incubated overnight at 4°C with primary antibodies anti-DppD (1:100, ab187048, Abcam, UK), anti-Claudin-2 (1:100, Product#51-6100, Invitrogen, USA), and anti-α-SMA (1:200, BM0002, BOSTER, China). Dipeptidyl peptidase (DppD) was used as a marker of PTs. Negative controls were incubated with phosphate-buffered saline (PBS). At room temperature, NRK49F cells cultured on coverslips were fixed with 4% paraformaldehyde for 5 minutes, permeabilized with 0.1% TritonTMX-100 for 10 minutes, and blocked with 2% BSA for 45 minutes. The cells were labeled with antibodies against PCNA (1:200, 10205-1-AP; Proteintech, Wuhan, China), α-SMA (1:200, BM0002, BOSTER, China), and anti-Claudin-2 (1:100, Product#51-6100, Invitrogen, USA). Secondary antibodies Alexa Fluor® 488 donkey anti-rabbit (Product#A32790, Invitrogen, USA), Alexa Fluor® 488 donkey anti-mouse (Product#A-11029, Invitrogen, USA) were used at a 1:300 dilution in vivo and 1:800 dilution in vitro, respectively. Nuclei were stained with 4’,6-diamidino-2-phenylindole (DAPI)(Sigma-Aldrich) according to the manufacturer’s instructions. Images were captured by fluorescence microscopy (Ni-V, Nikon, Japan), and photographs were recorded.
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8

Sorting and Characterizing Primary iCAFs and myCAFs

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Primary iCAFs and myCAFs were sorted from WEPtn-derived ILCs and after sorting directly lysed into lysisbuffer (1% Triton-X100, 150 mM NaCl, 50 mM Tris pH7.6, 1% sodium deoxycholate, 2 mM sodium orthovanadate and 1x complete protease inhibitor (Roche)). Samples were subjected to SDS-PAGE and western blotting on 0.2 um nitrocellulose membranes (Biorad, #1620112). Membranes were blocked in 5% non-fat milk in TBST and incubated overnight with the following antibodies: complement C3 (Abcam, ab200999) 1:1000. CD26 (Abcam, ab187048) 1:1000, TNC (Abcam, ab108930) 1:1000, TGFb1 (Abcam, ab179695) 1:1000, SMA (Sigma-Aldrich, clone 1A4) 1:1000 and Actin (Sigma-Aldrich, A5441) 1:2000. All primary antibodies were diluted in 5% non-fat milk in TBST. Secondary antibodies used for detection were diluted 1:2000 in 5% milk in TBST (goat-anti rabbit-HRP (Dako, P0448) and rabbit-anti mouse-HRP (Dako, P0260)).
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9

Quantifying AGE, SMA, and DPP4 in Aged Omental Tumors

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Tumor bearing omenta from young and aged mice (n=13) [3 (link)] were fixed with 10% formalin, then paraffin embedded and sectioned (5μm). Sections were de-paraffinized by xylene and were rehydrated in decreasing concentrations of ethanol. Antigen retrieval was done with 10mM sodium citrate, pH 6.0 (SMA, AGE antibodies) or Tris-EDTA buffer (10mM Tris, 1mM EDTA, 0.05% Tween 20, pH 9.0; DPP4 antibody). Endogenous peroxidases were blocked with 3% H2O2. Slides were blocked in horse serum, then incubated overnight at 4°C with an anti-AGE antibody (Abcam, ab23722, 1:10,000), an anti-SMA antibody (Abcam, ab5694, 1:1000), or anti-DPP4 antibody (Abcam, ab187048, 1:20,000) diluted in horse serum. All antibodies were then incubated with ImmPRESS HRP Horse Anti-Rabbit IgG (Vector Labs MP-7401) according to manufacturer’s specifications, developed with 3,3-diaminobenzene and counterstained with hematoxylin. Tissues were dehydrated in increasing concentrations of ethanol followed by xylene and mounted with Cytoseal XYL. Slides were imaged with Aperio ScanScope CS and analyzed with ImageScope software.
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