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Oragene og 500 collection kit

Manufactured by DNA Genotek
Sourced in Canada

The Oragene OG-500 collection kit is a self-collection device designed to collect and stabilize DNA samples from saliva. The kit provides a simple and convenient method for individuals to collect their own DNA sample without the need for a healthcare professional.

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3 protocols using oragene og 500 collection kit

1

Exome Sequencing of Unaffected Trios

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DNA was collected from all children meeting eligibility criteria and from their parents, using the Oragene OG-500 collection kit and standard extraction protocols (DNA Genotek, Ottowa, Ontario, Canada). Exome capture and sequencing were performed at the Yale Center for Genome Analysis (YCGA), using the NimbleGen SeqCap EZExomeV2 capture library (Roche NimbleGen, Madison, WI, USA) and the Illumina HiSeq 2500 platform (Illumina, San Diego, CA, USA). WES data from 853 unaffected parent-child trios (2,559 samples total) were obtained from the Simons Simplex Collection via the NIH Data Archive (https://ndar.nih.gov/edit_collection.html?id=2042). These children and their parents have no evidence of autism spectrum or other neurodevelopmental disorders [48 (link)]. The same exome capture and sequencing platforms were used for these control samples.
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2

Telomere Length Measurement in Saliva Samples

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DNA was isolated from saliva samples from 389 participants following the protocol from Oragene OG500 collection kit (DNA Genotek, Ottawa, Ontario, Canada). DNA concentration was determined by Qubit fluorometry (ThermoFisher Scientific, Waltham, MA, USA). Average telomere length was measured using an adaptation of qPCR methods (Drury et al., 2014 (link)). 33 ng of DNA was used for each assay containing 1X Power SYBR green (Applied Biosystems, Foster City, CA, USA) and 900 nM forward and reverse telomere (T) or 600 nM forward and reverse single copy albumin gene (S) primers (Table 1). Within a single experimental plate, all samples were run in triplicate for telomere and albumin reactions and cycle threshold (CT) values for each sample for each gene were averaged. All experimental plates were also run in duplicate with sample positions reversed. Individual samples were required to have an inter-plate coefficient of variation (CV) below 0.6. The geometric mean of all CV values for sample reactions on duplicate plates was required to be below 0.1 (Drury et al., 2014 (link)) . T/S Ratio was calculated using the ΔCT method as 2[Ct(T)Ct(S)] .
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3

Methotrexate Therapy in Rheumatoid Arthritis

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Patients diagnosed with RA [Citation18,Citation19] who started oral or subcutaneous MTX treatment at the Rheumatology Department, Uppsala University Hospital, Sweden, between 1 May 2013 and 30 September 2017, and the Rheumatology Department, Sunderby Hospital (Lulea), Sweden, between 1 January 2005 and 30 September 2017 were identified from electronic health records. Participating patients were followed from the start of MTX until treatment stop or for a minimum of 6 months. The same patient characteristics, details about the MTX therapy, and laboratory data as for the patients in the discovery cohort were collected. All patients provided a blood or saliva sample (2 ml Oragene ® OG-500 collection kit, DNA Genotek, Canada). All samples were kept at -70°C until DNA extraction. DNA was extracted according to standard procedures.
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