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10 protocols using rpmi 1640 culture medium

1

Isolation and stimulation of immune cells from PVM-infected neonatal mouse lungs

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At 7 dpi, the lungs of PVM-infected BALB/c neonatal mice were excised and digested using the Lung dissociation kit (Miltenyl Biotech, Germany). Following RBC lysis, the lung cells were stained with specific antibodies as above. Neutrophils [Ly6G+CD11b+], monocytes [Ly6C+CD11b+SiglecF], and CD4+ T (CD3ε+CD4+) were sorted from the 7-AADCD45+ fraction and AECs were sorted as [CD326+CD31] from the 7-AADCD45 fraction with >98% purity. The cells were seeded at 400,000 cells per well in 200 μl RPMI-1640 culture medium supplemented with 10% of fetal bovine serum (GE Healthcare), 1 mM of sodium pyruvate (Gibco, MA, USA), 2 mM of L-Glutamine (Gibco, MA, USA), 20 mM of HEPES (Gibco, MA, USA), 100 U/ml of Penicillin-Streptomycin (Gibco, MA, USA), and 50 μM of 2-Mercaptoethanol (Sigma-Aldrich, Mo, USA), then stimulated with BW245c (300 nM) or diluent. Culture supernatants were harvested 4 h later and stored at −80 °C prior to cytokine assay.
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2

Immunological Characterization of NLRP3 Inflammasome

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Human lymphocyte separation medium, 4-aminopyridine (4-AP), N-2-hydroxyethylpiperazine-N'-2′-ethanesulfonic acid (HEPES), and K+ asparate were obtained from Sigma-Aldrich (St. Louis, MO, USA). The TRIzol reagent, 5-bromo-4-chloro-3-indolyl phosphate/nitroblue tetrazolium (BCIP/NBT) solution and the reverse transcription kit (catalog no. K1622) were purchased from Thermo Fisher Scientific, Inc. (Waltham, MA, USA). The reverse transcription-quantitative polymerase chain reaction (RT-qPCR) kit (catalog no. 204054) was obtained from Qiagen (Hilden, Germany). In addition, the anti-NLRP3 (catalog no. 13158S; 1:1,000), anti-caspase-1 (catalog no. 3866S; 1:1,000), anti-IL-1β (catalog no. 31202S; 1:1,000) and anti-GAPDH (catalog no. 2118S; 1:1,000) rabbit monoclonal antibodies, as well as the anti-rabbit IgG, alkaline phosphatase-linked secondary antibody (catalog no. 7054S, 1:2,000), were from Cell Signaling Technology, Inc. (Beverly, MA, USA). The IL-1β ELISA kit (catalog no. BMS224/2) was obtained from eBioscience (San Diego, CA, USA), while the FITC-labeled anti-CD3 antibody (catalog no. 340571) and recombinant human IL-2 (rIL-2) were from BD Biosciences (San Jose, CA, USA). The RPMI 1640 culture medium and fetal bovine serum were from GE Healthcare (Chicago, IL, USA). The other patch-clamp associated reagents were obtained from Amresco (Solon, OH, USA).
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3

Lectin-mediated Endocytosis and Phagocytosis Assay

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Lectin-mediated endocytosis was examined after the co-incubation of phagocytes (5×105) with 500 µg/ml of FITC-Dextran (Sigma-Aldrich, MW 40000) for 30 min at 37 °C within RPMI1640 culture medium (GE Healthcare Life Sciences, Logan, UT, USA). To assess the phagocytosis of necrotic cells, Jurkat cells were fluorescently labeled with CFSE (Molecular Probes, Leiden, the Netherlands) according to the manufacturer's instructions. Then, the labeled cells (1×105) were co-cultured with Gal-4- or LPS-treated monocytes at 1:1 ratio for different time periods at 37°C or 4°C within 250 μl of RPMI1640 in round-bottom glass tubes. Subsequently, the stained cells were analyzed using FACSCanto II cytometer.
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4

Monocyte Isolation and Characterization

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Monocytes were isolated from the blood of healthy adult human donors using the Bøuym method as described in [72 (link)]. Blood samples were processed within two hours. The viability of isolated monocytes was measured by the cell morphology and flow cytometric annexin V-FITC and PI-A apoptosis detection kit II (BD Biosciences, Franklin Lakes, NJ, USA), according to the manufacturer’s protocol. Monocytes were suspended in the RPMI-1640 culture medium that had been supplemented with the 1% antibiotic PSN (penicillin—streptomycin—neomycin) solution (GE Healthcare, Little Chalfont, UK) and used for further research. The study was approved by the local Bioethics Committee at the Centre of Postgraduate Medical Education (no. 26/PB/2018).
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5

Inflammatory Response and Lipid Metabolism

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Fetal bovine serum (FBS), Dulbecco’s modified Eagle’s medium (DMEM), Roswell Park Memorial Institute (RPMI)-1640 culture medium and penicillin–streptomycin were purchased from GE Healthcare Life Sciences (Marlborough, MA, USA). IL-1β ELISA kit (Human 88-7261-22) and TRIzol reagent (15596018) was purchased from Invitrogen (Carlsbad, CA, USA). Lipopolysaccharide (LPS; L6529), palmitate (P9767) and MCC950 (PZ0280) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Pioglitazone was purchased from Takeda Pharmaceutical (AD-4833, Kanagawa, Japan). Ezetimibe was obtained from Cayman Chemical (16331, Ann Arbor, MI, USA). The triglyceride assay kit was purchased from Bioassay systems (ETGA-200, Hayward, CA, USA). Anti-F4/80 antibody was obtained from Abcam (ab6640, Cambridge, MA, USA). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) was purchased from Georgiachem (MT 1036, Norcross, GA, USA).
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6

Isolation and Stimulation of Immune Cells

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Cells of lymph nodes draining the site of immunization (PLN) were obtained from rats immunized with 100 µl of emulsion made of MBP and CFA, as described above. PLN cells (PLNC) were obtained by mechanical disruption. The isolation took place at 4, 7, and 14 days post immunization (d.p.i.). Mesenteric lymph nodes (MLNs) and Peyer’s patches (PP) were isolated from non-immunized rats and from rats on 4, 7, and 14 d.p.i. Four MLN were isolated from each rat and MLN cells (MLNC) were prepared by mechanical disruption. PP were obtained from the small intestine and PP cells (PPC) were obtained by mechanical disruption. PLNC were cultured in RPMI 1640 culture medium (PAA Laboratories, Pasching, Austria) that was supplemented with 2% rat serum. The cells were seeded at 5 × 106/ml/well in 24-well plates (Sarstedt, Nümbrecht, Germany) and stimulated with MBP (10 µg/ml). MLNC and PPC were grown in RPMI1640 medium supplemented with 5% fetal calf serum (PAA Laboratories). MLNC (2.5 × 106/ml) and PPC (2 × 106/ml) were stimulated with concanavalin A (ConA, Sigma-Aldrich, 2.5 µg/ml). Cultures lasted for 24 h and subsequently cell culture supernatants were collected and kept frozen until assayed. Supernatants were also obtained from SCHs (1 g of spinal cord homogenized in 2 ml of PBS) after centrifugation on 10,000 g for 20 min.
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7

Neutrophil Isolation and Cell Death

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Human polymorphonuclear cells (PMNs) were freshly isolated from Na-citrate-treated blood of healthy donors. For neutrophil-isolation, dextran-sedimentation and density gradient centrifugation using Ficoll-Paque Plus (Amersham Bioscience) was used according to the manufacturer's instruction. Cell purity was determined by Giemsa staining and was always above 99%. PMNs were suspended to a final density of 1×106 cells/0.5 ml in RPMI 1640 culture medium (PAA Laboratories GmbH) supplemented with 10% heat-inactivated FCS (PAA Laboratories GmbH) and immediately used for the experiments. All incubations were performed at 37°C in humidified air with 5% CO2.
To measure cell death induction 1x106 cells/0.5 ml PMNs were cultured at 37°C in a 5% CO2 atmosphere in 24-well plates and bacterial supernatants were added as indicated. After 1 h cell death induction was analyzed as described previously [78 (link),79 (link)].
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8

Premature Chromosome Condensation (PCC) Assay

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The PCC test was performed as previously described [17 (link)]. To summarize, whole blood (0.5 ml) was added to 4.5 ml of RPMI 1640 culture medium (PAA Laboratories GmbH, Pasching, Austria) and stimulated by adding PHA (10 mg/mL) (Sigma-Aldrich, St. Louis, MO, United States) supplemented with 10% heat-inactivated fetal bovine serum (Gibco, Carlsbad, CA, USA) and antibiotics—100 U/ml penicillin and 100 g/ml streptomycin (Polfa Tarchomin, Warsaw, Poland). The cultures were incubated for 48 h at 37 °C and 5% CO2. Exactly 30 minutes before ending the culturing process, calyculin A (50 nM) was added to the culture medium causing the induction of PCC in any PHAse of the cell cycle (G1, S, G2, M, and A). After 48 hours of cell culture, the cells were harvested according to previously published procedures [17 (link)]. The samples were dropped onto an ethanol-washed microscopic slide. Fixed samples were stained with 4% Giemsa in phosPHAte-buffered water and stored at room temperature until examination. Each measurement point was prepared in triplicate. All slides were coded and blinded to the scorer. Decoding was completed only after the microscopic examination of all slides from the study.
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9

Assessing Cytokine Responses to Uropathogen LPS

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Whole blood was obtained in EDTA containing tubes under sterile conditions. 300 μL whole blood were added to 300 μL RPMI 1640 culture medium (PAA Laboratories, Pasching, Austria) supplemented with 2 mM L-glutamine, 50 μg/mL penicillin/streptomycin, 5 mM HEPES, 10 μM mercapto-ethanol and 0.1% fetal calf serum, and seeded in 24-well plates (Greiner, Nürtingen, Germany) at 37°C (5% CO2/95% air atmosphere). For stimulation, 1 ng/mL lipopolysaccharide (LPS, Sigma-Aldrich, Taufkirchen, Germany) was added to culture medium. Supernatants were collected after 24 h and stored at -20°C until analyses. LPS was chosen for stimulation because of its important role for immunological recognition of and response to uropathogens, i.e. E. coli [2 (link)]. Levels of pro-inflammatory interleukin-1ß (IL-1β), IL-8, in the culture supernatant were measured by enzyme-linked immunosorbent assay (ELISA) according to manufacturer‘s protocol and the alarmin S100A8/S100A9 was measured by a home-made ELISA as described in [15 (link)].
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10

Isolation and purification of human monocytes

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Human peripheral blood mononuclear cells (PBMCs) were isolated from EDTA-blood of healthy donors by the Ficoll/Isopaque (Pharmacia, Uppsala, Sweden) density gradient centrifugation. Monocytes were separated from PBMCs by counter-flow centrifugal elutriation with the JE-6B elutriation system equipped with a 5 ml Sanderson separation chamber (Beckman-Coulter, Palo Alto, CA), as previously described [19 (link)]. Monocytes were suspended in RPMI 1640 culture medium (PAA Laboratories, Pasching, Germany) with gentamycin (Sigma, St. Louis, MO) (25 μg/ml). Purity of monocytes was over 95 %, as judged by staining with anti-CD14 mAb (BD Biosciences Pharmingen, San Diego, CA) and flow cytometry analysis (FACSCanto BD Biosciences Immunocytometry Systems, San Jose, CA). The study was approved by the local Jagiellonian University Ethical Committee (No. KBET/160/b/2011).
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