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100 mm rntps

Manufactured by Promega

100 mM rNTPs is a solution containing 100 millimolar concentrations of the four ribonucleotides (rNTPs): ATP, GTP, CTP, and UTP. This solution is commonly used as a substrate for in vitro transcription reactions and other applications requiring purified rNTPs.

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2 protocols using 100 mm rntps

1

Planarian RNAi Using In Vitro-Transcribed dsRNA

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dsRNA was prepared from in vitro transcription reactions (Promega) using PCR-generated forward and reverse templates with flanking T7 promoters (TAATACGACTCACTATAGGG). Each template (16 μl) was mixed with 1.6 μl of 100 mM rNTPs (Promega); 0.6 μl of 1M dithiothreitol (DTT; Promega); 4 μl of T7 polymerase; and 24 μl of 5x Transcription optimized buffer (Promega). Reactions were incubated for 4 h at 37°C. RNA was purified by ethanol precipitation, and re-suspended in a final volume of 30 μl milliQ H2O. Forward and reverse strands were combined and annealed by heating at 56°C followed by cooling to 37°C. Animals used for RNAi were starved at least one week prior to first feeding and animals were fed twice a week. The RNAi food mixture was prepared using 12 μl dsRNA for 30 μl planarian food (homogenized beef liver)[73 (link)]. For wntP-2; sp5 double RNAi experiments, every 1 part wntP-2 dsRNA was mixed with 2 parts sp5 dsRNA. Caenorhabditis elegans unc-22 was used as the control condition [74 (link)].
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2

Planarian RNAi Feeding Protocol

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dsRNA was prepared from in vitro transcription reactions (Promega) using PCR-generated forward and reverse templates with flanking T7 promoters (TAATACGACTCACTATAGGG). Each template (16 μl) was mixed with 1.6 μl of 100 mM rNTPs (Promega); 0.6 μl of 1M dithiothreitol (DTT; Promega); 4 μl of T7 polymerase; and 24 μl of 5x Transcription optimized buffer (Promega). Reactions were incubated for 4h at 37°C. RNA was purified by ethanol precipitation, and re-suspended in a final volume of 30 μl milliQ H2O. Forward and reverse strands were combined and annealed by heating at 56°C followed by cooling to 37°C. Animals were starved for 1-2 weeks prior to first RNAi feeding and were fed twice a week. RNAi food mixture was prepared using 12 μl dsRNA for 30 μl planarian food (homogenized beef liver) (Rouhana et al., 2013 (link)). For RNAi of two or more genes, dsRNA for each gene was diluted in half (Scimone et al., 2016 (link)). For β-catenin-1 double-RNAi experiments, animals were fed once with β-catenin-1 or control dsRNA at the end of the feeding regimen. C. elegans unc-22 was used as the control condition (Benian et al., 1989 (link)).
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