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5 protocols using ecl western substrate

1

VHH Anti-HA Immunoprecipitation and Immunoblotting

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Anti-HA immunoprecipitations (IP) were performed on culture supernatants of transduced cells using the Pierce HA-Tag IP/Co-IP Kit (Thermo Fisher Scientific). HA tags were located at the C-terminus of the secreted VHHs. Supernatant (850 μL) was incubated with anti-HA agarose beads overnight, and eluates were run on a 12% SDS PAGE gel and transferred to a PDVF membrane (Bio-Rad TurboBlot). Membranes were blocked in 5% milk in TBST and incubated with anti-HAHRP mAb overnight. Membranes were developed with western ECL substrate (PerkinElmer) and imaged on a Bio-Rad ChemiDoc imager. For immunoblots on cell lysates, cells were lysed with RIPA buffer (25 mmol/L Tris, 150 mmol/L NaCl, 1% NP-40, 0.5% sodium deoyxcholate, and 0.1% SDS) and protease inhibitor (complete mini protease inhibitor, Sigma). DNA was removed through benzonase digestion, and lysates were boiled with Laemmli sample buffer and 2-mercaptoethanol.
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2

Western Blot Analysis of CALM-AF10 Fusion Proteins

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293T cells were transfected with 1XFLAG CALM-AF10MF or 1XFLAG CALM-PZPAF10MF. Non-transfected cells were used as controls. Whole-cell lysates were prepared by lysing cells in RIPA buffer containing Protease and Phosphatase Inhibitor Cocktail (ThermoFisher Scientific). Proteins were quantified using Bradford protein assay (Bio-rad) and processed using NuPAGE LDS sample buffer and reducing reagent (ThermoFisher Scientific) for loading equal amounts (40 µg) onto the gels. SDS-PAGE electrophoresis was done using NuPAGE 4–12% Tris-glycine gels and proteins were transferred to nitrocellulose membrane using iBlot 2 gel transfer device and gel stacks (ThermoFisher Scientific). Primary antibodies were diluted in blocking buffer (4% milk in TBS-Tween20) or in 5% BSA in TBST and incubated overnight at 4 °C. Then incubated with horseradish peroxidase (HRP)-conjugated anti-mouse or anti-rabbit secondary antibodies for an hour. Dilutions for all the antibodies are mentioned in the source data file. Blots were developed using Western ECL substrate (PerkinElmer) and images were acquired using ChemiDoc MP Imaging System (Bio-Rad) and processed using Image Lab Software (Bio-Rad).
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3

Quantifying Protein Expression in PyMT Cells

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Total protein was isolated using Complete LysisM Buffer (Roche). Protein was diluted to equal concentrations and equally loaded on 10% polyacrylamide gels prior to transfer to a nitrocellulose membrane. Protein concentration was determined using micro plate BCA assay (BioRad). Blots were incubated overnight with PyMT (Santa Cruz Cat#53481 1:1000), pSmad1/5 (Cell Signaling Cat#9516 1:1000), and Actin (Sigma Cat#A2066 1:4000) antibodies. HRP-conjugated secondary antibodies were used to visualize band intensity via x-ray film exposure using ECL western substrate (Perkin Elmer).
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4

Western Blot Analysis of Smad1 Signaling

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Total protein was isolated using Complete LysisM Buffer (Roche). Protein was diluted to equal concentrations and equally loaded on 10% polyacrylamide gels prior to transfer to a nitrocellulose membrane. Protein concentration was determined using micro plate BCA assay (Pierce). Blots were incubated overnight with Smad1 (Cell Signaling Cat#6944 1:1000), pSmad1/5 (Cell Signaling Cat#9516 1:1000), and Actin (Sigma Cat#A2066 1:4000) antibodies. HRP-conjugated secondary antibodies were used to visualize band intensity via x-ray film exposure using ECL western substrate (Perkin Elmer).
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5

Investigating Smad Signaling Pathway

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Total protein was isolated using Complete LysisM Buffer (Roche, Indianapolis, IN, USA). Protein was diluted to equal concentrations and equally loaded on 10% polyacrylamide gels prior to transfer to a nitrocellulose membrane. Protein concentration was determined using micro plate BCA assay (BioRad, Hercules, CA, USA). Blots were incubated overnight with Smad1 (Cell Signaling Cat#6944 1:1000), Smad 2 (Cell Signaling Cat#5339 1:1000), pSmad1/5 (Cell Signaling Cat#9516 1:1000), pSmad2 (Cell Signaling Cat#3108 1:1000), and Actin (Sigma Cat#A2066 1:4000) antibodies. HRP-conjugated secondary antibodies were used to visualize band intensity via x-ray film exposure using ECL western substrate (Perkin Elmer, Waltham, MA, USA). Conditioned medium was collected 48 h after equal cell numbers were plated into T-75 culture flasks. Supernatant was spun to remove cells and debris and 500 μL were used per membrane for Human cytokine array XL, performed following manufacturer instructions (RnD Systems Cat#ARY006) with assistance from VAPR (Vanderbilt Antibody Protein Resource). sTβRIII was no longer present in the conditioned medium collected, and was replaced with new medium after 48 h of treatment followed by an additional 48 h of medium conditioning, which was then collected. We did not alter the serum level or perform starvation.
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