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4 protocols using 6 well culture plates

1

Protein Extraction and Western Blot Analysis

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Cells grown to confluence on 6-well culture plates (VWR) were harvested after the specified treatment period and washed with PBS. Protein was extracted from the cells using mammalian protein extraction reagent with protease inhibitor cocktail (Pierce Biotechnology, Rockford, IL), and quantified with a protein assay (Bio-Rad, Hercules, CA). Equal amounts of protein were resolved on 8–16% Tris-HCL polyacrylamide gels (Pierce Biotechnology, Rockford, IL) and transferred to PVDF blotting membranes (Millipore, Billerica, MA). Membranes were probed with rabbit polyclonal anti-gamma glutamyl cysteine ligase, catalytic subunit (GCLC) (Abcam, Cambridge, MA), rabbit anti-cleaved caspase 3 (Cell Signaling Technology, MA), mouse anti-CHOP (Pierce Biotechnology, IL), rabbit anti-GRP78 (Sigma Aldrich, St. Louis, MO), rabbit anti-COX IV (Cell Signaling Technology, MA), rabbit polyclonal anti-GRX2 (GeneTex, Irvine, CA) and rabbit anti-β-Tubulin (Cell Signaling Technology, MA) overnight at 4°C. After incubation with corresponding secondary antibody tagged with horseradish peroxidase, signals were detected using an ECL chemiluminescence system (Pierce Biotechnology, IL). Membranes were then stripped and reprobed with monoclonal anti-GAPDH (Millipore, Billerica, MA). Protein band intensity was measured by Image Studio Software (Li-Cor, Lincoln, NE) [30 (link)].
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2

Crystal Violet Colony Staining Protocol

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Crystal violet was purchased from Sigma-Aldrich. A Crystal violet stock solution of 1% w/v in 20% ethanol in dH2O (100x) was prepared for the assay and was diluted to 0.1% w/v for colony staining. 37% formaldehyde was purchased from Ricca Chemical Company (Arlington, TX). A 3.7% formaldehyde (FA) solution in DPBS was used to fix the colonies. 6-well culture plates were purchased from VWR (Radnor, PA).
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3

Radiolabeled Pharmaceuticals Acquisition Protocol

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Radio-labelled pharmaceuticals including 3H-propranolol hydrochloride (29.0 Ci mmol− 1) were acquired from Amersham Biosciences. 3H-metoprolol (29.7 Ci mmol− 1), 3H-formoterol (18.5 Ci mmol− 1) and 3H-terbutaline (29.0 Ci mmol− 1) were obtained from Vitrax. 14C-ibuprofen (2.03 Ci mmol− 1) was obtained from American Radiolabelled Chemicals Inc. (St Louis, US). 3H-ranitidine (2.5 Ci mmol− 1) was obtained from Moravek Biochemicals, 14C-diclofenac (0.063 Ci mmol− 1) and 3H-imipramine hydrochloride (48.5 Ci mmol− 1) from Perkin-Elmer. All stock solutions were stored in ethanol. Hydrogen peroxide solution (30% w/w) and analytical grade salts (> 99%) including sodium hydrogen carbonate, magnesium sulphate, calcium sulphate, potassium chloride were purchased from Sigma (Dorset, UK). Tissue solubiliser (Solvable™) and liquid scintillation cocktail (Hionic Fluor™) were purchased from Fischer Scientific Ltd. (Loughborough, UK). Ultra-pure water was obtained from a Millipore Milli-Q water purification system with a specific resistance of 18.2 MΩ·cm or greater (Millipore, Bedford, MA, USA). 6-Well culture plates were obtained from VWR (Leicestershire, UK).
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4

Ultrastructural Analysis of C. suis Inhibition

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Confluent IPEC-1 cells (2.5 × 105 cells/well) grown in 6-well culture plates (VWR, Vienna, Austria) were infected with 5 × 103C. suis sporozoites. The next day, cells were incubated with predetermined IC50 (40 nM) or IC95 (200 nM) concentrations of BKI 1369 (see above section on efficacy testing) at 40 °C for five days. Infected cells incubated with 0.001% DMSO served as controls. After 24 h, 72 h, 96 h and 120 h of incubation, medium supernatant was removed, the monolayers were washed twice with phosphate buffer saline (PBS) and fixed with 5% glutaraldehyde (Merck, Darmstadt, Germany) in 0.1 M sodium phosphate buffer (pH 7.2) for 10 min at 4 °C. Cells were carefully collected using a rubber scraper (TPP, Switzerland) and subjected to centrifugation at room temperature for 5 min at 390×g. The supernatant was removed and cells were postfixed with 1% osmium tetroxide (Merck) for 1 h at 4 °C. After dehydration in an alcohol series and propylene oxide (Merck), the cells were embedded in glycidyl ether 100 (Serva, Heidelberg, Germany). The ultra-thin sections were cut on a Leica Ultramicrotome (Leica Ultracut S, Vienna, Austria), stained with uranyl acetate (Sigma-Aldrich, Vienna, Austria) and lead citrate and examined in a Zeiss TEM 900 electron microscope (Carl Zeiss, Oberkochen, Germany) operated at 50 kV.
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