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4 protocols using cd11b apc cy7

1

Profiling Immune Cell Functionality

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Single-cell brain and bone marrow suspensions were washed twice in 1X sterile, cold PBS, followed by viability staining with Ghost Dye 510 (Tonbo Biosciences) for 30 minutes in the dark at room temperature. Cells were centrifuged at 500g for 5 minutes at 4°C, the supernatant was discarded and the pelleted cells were re-suspended in 100ul of 1:100 FC Receptor Block (Tonbo Biosciences) for 10 minutes at room temperature. Cells were then stained with following surface antibodies: CD45-vf450, CD11b-APC-Cy7, Ly6G-Pe-Cy7, Ly6C-APC (Tonbo Biosciences) for 30 minutes at room temperature, protected from light. Following surface staining, samples were incubated with dihydrorhodamine 1,2,3 (DHR) and 200 nM PMA for 45 minutes at 37°C according to the manufacturer’s instructions (Neutrophil Monocyte Respiratory Burst Assay Kit, Cayman Chemical), then washed and analyzed immediately for rhodamine fluorescence on a Beckmann Coulter Cytoflex S Flow Cytometer. Data was analyzed using FlowJo (TreeStar).
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2

Multiparametric Immune Cell Phenotyping

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Following this blocking step, cells were re-suspended in the following cocktail of fluorescently conjugated antibodies: CD45-vf450 (Tonbo Biosciences), CD11b APC-Cy7 (Tonbo Biosciences), Ly6G-PeCy (Tonbo Biosciences) and Ly6C-PeCF594 (BD Biosciences) and incubated for 30 minutes at room temperature. After staining, cells were washed twice and re-suspended in 300ul FACS buffer for analysis on a Cytoflex S Flow Cytometer (Beckmann Coulter). Data files were analyzed using FlowJo (TreeStar). The representative gating strategy used is given in Supplementary Figure 2. Positive and negative populations were defined using fluorescence minus one (FMO) controls.
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3

Multicolor FACS Analysis of B Cell Subsets

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Cells were resuspended at a concentration of 106 cells/100 μl fluorescence-activated cell sorting (FACS) buffer (1X PBS, 2 mM EDTA, 1% BSA). Cells were stained with Fc block (BD Biosciences) for fifteen minutes, stained with antibody-fluorophores for one hour on ice, then washed with ten volumes of FACS buffer. The following antibodies were used: B220-PE-Cy7 (RA3–6B2, Tonbo), CD11b-APC-Cy7 (M1/70, Tonbo), CD45.1-FITC (A20, Tonbo), CD45.2-PerCP-Cy5.5 (104, Tonbo), CD90.2-APC-Cy7 (30-H12, BioLegend), F4/80-APC-Cy7 (BM8, BioLegend), CD138-BV711 (281–2, BD), CD21-APC (B-ly4, BD), CD43-PE (S7, BD), GL7-eFluor660 (GL-7, eBioscience), CD23-eFluor450 (B3B4, eBioscience), IgM-FITC (II/41, eBioscience), Annexin V-APC (kit number 88–8007-72, eBioscience), and Zombie Yellow Fixable Viability Dye (kit number 423104, BioLegend). An LSRII was used for analysis and an ARIAII was used for sorting (BD Biosciences). All flow cytometry data was analyzed with FlowJo version 9.9.5. Preceding all flow cytometry analyses presented is the following gating strategy: 1) lymphocytes (forward scatter [FSC]-area by side scatter [SSC]-area), 2) singlets (FSC-width by FSC-height), 3) singlets (SSC-width by SSC-height), 4) live cells (viability dye), 5) exclusion of non-B cell lineage cells (Thy1.1F4/80CD11b).
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4

Flow Cytometric Analysis of Lung Immune Cells

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The lungs were aseptically collected from mock and IAV-infected mice, and single cells were prepared after collagenase digestion of lungs, as previously described (PMC7336542). One million cells per sample were stained with Ghost Dye-BV510 (Tonbo Biosciences, San Diego, CA) and anti-mouse CD16/CD32 (FC blocked) (BD Biosciences, San Jose, CA) for 30 min at 4°C for 30 min. For cell surface staining, cells were incubated for 30 min at room temperature with anti-mouse CD3-APC-Cy7, CD3-AF488, CD4-BV786, CD8-PE-Cy7(Tonbo), CD8-PE-Cy5, CD44 PerP-Cy5.5, CD44 PE-Cy7, CD62L-FITC, CXCR3-BV-650, CXCR3-PE-Dazzle; For monocytes, cells were stained with Cd11b APC/Cy7, Ly6C BV711, Ly6G FITC and CCR2 PE/Cy7. All the antibodies were purchased from Biolegend unless specified.
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