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5 protocols using anti tim 3 pe cy7

1

Profiling Exhausted T Cell Markers

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The expression of exhausted and cytotoxic markers of T cell was analyzed by flow cytometry. After 5 days of co-culture, cells were suspended in PBS containing 2% FBS and incubated according to the manufacturer’s instructions with the following fluorochrome-labeled antibodies: anti-CD8-APC-A700 (#B49181, Beckman Coulter), anti-CD4-APC (#IM2468, Beckman Coulter), anti-TIGIT-PE-Cy7 (#372714, Biolegend), anti-CTLA-4-BV785 (#369624, Biolegend), anti-Tim-3-PE-Cy7 (#345052, Biolegend), anti-LAG-3-BV605 (#369324, Biolegend), anti-PD-1-BV510 (#367424, Biolegend), anti-Granzyme B-PE (#372208, Biolegend), anti-IFN-γ-FITC (#IM2716U, Beckman Coulter). Cells were stained with fluorochrome-conjugated antibodies for 30 min at room temperature in the dark. For intracellular staining, surface-stained cells were fixed and permeabilized using PerFix-nc Kit (#B31168, Beckman Coulter) according to the manufacturer's instructions. Flow cytometry analyses were performed on DxFlex system (Beckman Coulter) and data were analyzed using FlowJo software (v10.5.3).
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2

Comprehensive Pancreatic Immune Profiling

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Pancreas and pancreatic tumor single-cell suspensions were washed first with PBS and then Fc receptors were blocked for 10 min at 4°C. For pancreatic myeloid cells, single-cell suspensions were stained with viability dye-APC eFluor-780 (eBioscience), anti-CD45-PerCP-Cy5.5, anti-CD11b-PE-Cy7, anti-F4/80-FITC, anti-Ly6C-AlexaFluor 700, and anti-Ly6G-APC (BioLegend). For T cells, cells were stained with viability dye-APC eFluor 780, anti-CD3-PE-Cy5, anti-CD4-APC, anti-CD8-PerCp-Cy5.5, anti-CD69-AlexaFluor 700, anti-TIM-3-PE-Cy7, anti-LAG-3-PE-Dazzle 594, and anti-PD-1-APC (BioLegend). Cells were incubated at 4°C for 30 min, washed with cold PBS, filtered, and collected using CyTEK Aurora Northern lights 2 laser flow cytometer (CyTEKbio). All flow cytometry data were analyzed using FlowJo software (BD).
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3

PD-1/PD-L1/PD-L2 Expression Profiling

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PD-1 ligand expression was determined using anti-PD-L1-PE or PD-L2-PE, combined with HLA-DR-perCP (BD, Franklin Lakes, NJ). PD-1 expression was determined using anti-PD-1-PE/isotype control (BioLegend, San Diego, CA), in combination with anti-CD3-PB, CD45RA-V500 and HLA-DR-APC-Cy7 (BD). At day 5 post-infection eFluor670highEGFPCD45RA T-cells were sorted into PD-1high and PD-1low/− populations. Some donors were labelled with both anti-PD-1-PE and anti-Tim-3-PE-Cy7 (BioLegend), and cells positive for both or either IC (PD-1/Tim-3high), or cells negative for both IC (PD-1low/−Tim-3low/−) were sorted.
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4

Multiparameter Immune Cell Profiling

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Anti–CD3ε-PerCP (100326), anti–CD8a-AF700 (100730), anti–CD8a-APC (100712), anti–PD-1-PE/DZ594 (109116), anti–Ki67-FITC (652410), anti–TCF1-PE (655208), anti–IFN-γ-BV421 (505830), anti–IFN-γ-PerCp/Cy5.5 (505822), anti–TNF-α-APC/Cy7 (506344), anti–TIM-3-PE/Cy7 (119716), anti–CD45-BV510 (103138), anti–Ly108 (Slamf6)-PE (134606), anti–PD-1-FITC (135214), anti–CD45.1-PE (110708), anti–CD45.2-AF488 (109816), purified anti-mouse CD3ε (100340), and purified anti-mouse CD28 (102116) were obtained from Biolegend. Anti–CD8-FITC (D271-4) and tetramer-SIINFEKL-APC (TS-5001-2c) were purchased from MBL. Cell Stimulation Cocktail Plus Protein Transport Inhibitors and FOXP3/TF Staining Buffer Set were bought from eBioscience. Naive CD8a+ T Cell Isolation and Tumor Dissociation Kits were obtained from Miltenyi Biotec.
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5

Multicolor Flow Cytometry Antibody Panel

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The following antibodies were purchased from BioLegend (San Diego, CA, USA): anti-CD4-PE-CY7, anti-CD8-APC, anti-CD3-FITC, anti-CD45-PE, anti-Gr-1-APC, anti-CD11b-PE, anti-F4/80-FITC, anti-CD206-APC, anti-CD86-PE-CY7, anti-CD4-FITC, anti-CD25-APC, anti-Foxp3-PE, anti-PD-1-FITC, anti-Tim3-PE-CY7, TruStain FcX PLUS (anti-mouse CD16/32), and isotype control. Antibody concentrations were used according to the manufacturer’s instructions.
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