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57 protocols using g2500

1

Methacrylated Porcine Gelatin Synthesis

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Porcine gelatin (G2500, Merck, USA) was dissolved for 1 hours at 10% (w/v) in 100 mL Dulbecco’s phosphate-buffered saline (PBS) at 50 oC. Subsequently, 8 mL methacrylic anhydride (276685, Merck, USA) was dissolved in the gelatin-PBS solution and stirred for 2 hours at 50 oC for methacrylation. In order to stop the reaction, 100 mL PBS was added at 50 oC. Then, the solution was dialyzed at 40 oC for 7 days using dialysis membranes (Fisher Scientific, Mw cut off: 12–14 kDa) to remove the impurities. The purified solution was filtrated by a vacuum filtration cup (Millipore Sigma, pore size : 0.22 μm). This solution was frozen at −80 oC freezer and then lyophilized.
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2

HUVEC Invasion Assay Using Transwells

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Transwells (polycarbonate membrane, diameter 6.5-mm, pore size 8-µm; Corning Costar, USA) coated with 0.05% gelatin (#G2500, Merck) were used to performed cell invasion assay. Briefly, HUVECs (3 × 104) resuspended in 200 µL serum-free ECGM2 were seeded onto the upper chamber, and 0.6 mL of various working media were then added to the lower chamber as chemoattractants. After 16-hr incubation, the non-invading cells on the upper side of the membrane were removed by cotton swab and the invading cells on the lower side of the membrane were fixed with cold methanol and then stained with DAPI. The invading cells in three randomly selected fields were photographed under a fluorescent microscope (Leica IX70, Heidelberg, Germany) and their numbers were counted using ImageJ software.
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3

Biopolymer-Based Biomaterial Fabrication

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List of the chemicals used in this study are as follows: Gelatin type A from porcine skin (G2500, Sigma Life Sciences, St. Louis, MO, USA), sodium alginate (VIVAPHARM® alginate PH163 S2, from brown algae, with approval as a pharmaceutical excipient, JRS PHARMA GmbH & Co. KG, Rosenberg, Germany), methacrylic anhydride (MA, Sigma-Aldrich, St. Louis, MO, USA), Dulbecco’s Phosphate Buffered Saline (DPBS, Sigma-Life Science), poly (d, l-lactide-co-glycolide) (PLGA 75:25, 66,000–107,000, Sigma-Aldrich), polyvinyl alcohol, (PVA, 86–89% low molecular weight ThermoFisher, Kandel, Germany), calcium chloride dihydrate (CaCl2·2H2O, Carl Roth, Karlsruhe, Germany), dichloromethane (DCM, >99.8%, Sigma-Aldrich), sodium periodate (Carl Roth), ethanol absolute (VWR International), ethylene glycol (Carl Roth), and lithium phenyl-2,4,6-trimethyl-benzoyl phosphinate (LAP, Tokyo Chemical Industry (TCI), Tokyo, Japan).
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4

Photoacoustic Tomography System Characterization

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The full-ring US transducer and illumination system, shown in Fig. 2(a), also used a gelatin phantom for system characterization. In this experiment, an 89  mJ/pulse laser source (PhocusCore, Optotek, California, USA) was expanded to a ring shape, resulting in 4.7  mJ/cm2 of fluence at 532 nm. The ring US transducer has a 200-mm inner diameter and comprised 256 elements, with an element pitch of 2.45 mm and a height of 9 mm. In PAT mode, the scattered signals were recorded by all 256 elements at a sampling rate of 8.33 MHz. The 243-mm diameter parabolic reflector and the cone-shaped reflector were used to create the ring-shaped beam with 4-mm thickness on the phantom surface. The phantom used for this experiment was 7.5 cm in diameter and made of 12% porcine skin gelatin (G2500, SIGMA-ALDRICH, Missouri) mixed with 0.4% cellulose (S5504, SIGMA-ALDRICH, Missouri). Three graphite rods, with 2-mm thickness, were placed horizontally inside the phantom in three layers [Fig. 2(b)]. The ring beam was adjusted on each cross-sectional slice by translating the phantom in the vertical direction. The results from this experiment demonstrated the uniqueness of the all-reflective PAT system in creating co-registered PA-US tomographic images with significant depth and will be discussed further in the results section.
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5

Immunofluorescence Staining of Reprogrammed Cells

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Cells were grown on coverslips pretreated with 0.3% porcine gelatin (Sigma G2500) in ESC medium for 48h. After fixation with 4% paraformaldehyde the cells were washed with 1×PBS- 0.05% Tween, permeabilized with 1×PBS-0.5% Triton-X, and blocked with 5% donkey serum in 1×PBS-0.05% Tween. Primary antibody incubation was carried out at 4°C overnight, secondary antibody incubation was carried out at RT for 30min, each in blocking buffer. Between each incubation, cells were washed with 1×PBS-0.05% Tween for three times. Cells were then mounted using a mounting medium with DAPI (Vector Labs H-1200). Antibodies used for Nanog and DPPA4 to detect reprogrammed colonies are listed above. Antibodies for the detection of O,S,K,M or Esrrb were: anti-Oct4 (RnD; AF1759), anti-Sox2 (RnD AF2018), anti-Klf4 (RnD; AF3158), anti-cMyc (RnD; AF3158) and anti-Esrrb (RnD; H6705).
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6

Gelatin Channel Fabrication Protocol

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Gelatin channels were fabricated using the molding technique. A mold was prepared using a silicon container and a cylindrical plastic tube (outer diameter: 1 mm) in which 10 wt% molten gelatin in PBS was crosslinked into a tubular channel structure. To prepare 10 wt% gelatin solution, 10 g of gelatin powder (G2500, Sigma-Aldrich) was dissolved in 100 mL of PBS buffer heated to ~60 °C. Then, the gelatin solution was poured into the mold and allowed for crosslinking at 4 °C for ~30 min. After crosslinking, the plastic tube was gently slipped out and the gelatin channel block was removed from the mold. The gelatin block was then placed in a Petri dish at room temperature (~24 °C) for ~15 min before one end was connected to a syringe pump (GenieTouch Syringe Pump, Kent Scientific) via a polymer tubing (Masterflex, Cole-Parmer) for in vitro cell delivery experiments.
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7

Electrospun 3D PLGA, PCL, and PCL-Gelatin Matrices

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The electrospinning solutions were prepared in 1,1,1,3,3,3-hexafluoroisopropanol using PLGA 50:50 (Lactel, B6010-1, Birmingham, AL, USA), pure PCL (Aldrich, 440744, St Louis, MO, USA) or PCL blended with Gl (PCL-Gl) from porcine skin (Sigma, G-2500, Switzeland). 3D matrices with a thickness of 120–150 µm were produced from 15% (w/v) PLGA, 7% (w/v) PCL or 5% (w/v) PCL-Gl (9:1 w/w) solutions on an NF-103 (MECC CO., LTD., Ogori-shi, Fukuoka, Japan) electrospinning device using a blunt-end surgical needle 27G (0.4 mm inner diameter). Fibers were electrospun onto a rotating drum collector (diameter 60 mm, length 35 mm) under the following conditions: feed rate 1–1.15 mL/h, capillary-collector distance 19–20 cm, voltage 18.5–24 kV, drum collector rotation speed 300 rpm, humidity 25–35%. After fabrication, 3D matrices were removed from the collector, incubated under vacuum for 12 h and stored in sealed zip-lock polyethylene containers at 4 °C.
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8

Preparation of Fibrin Hydrogel Components

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The sacrificial gelatin solution (12 mg/ml) was prepared by dissolving gelatin powder from porcine skin (G2500, Sigma) in 1x Dulbecco’s PBS (DPBS without calcium and magnesium, Invitrogen), warming and vigorously stirring at 60 °C for 30 min. The gelatin solution was then sterile-filtered, aliquot and stored at 4 °C for future use. The fibrinogen solution (6 mg/mL) was prepared by dissolving lyophilized fibrinogen from bovine plasma (F8630, Sigma) in DPBS at 37 °C for 2h. The sterile-filtered fibrinogen solution was stored at 4 °C for future use within one week. The thrombin solution was prepared by reconstituting lyophilized thrombin (604980, Sigma-Aldrich) in sterile DPBS to 100 U/mL and stored in aliquots at −20 °C.
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9

Electrospun PCL-Gelatin Vascular Graft

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LLC Scaffold production: Polycaprolactone (PCL) pellets (Sigma, 440744) and type A porcine-derived gelatin (Sigma, G2500) solution were prepared at 10% (w/v) concentration, by dissolving in HFP at a ratio of 90:10. The solution was left to homogenise overnight in a rotator at room temperature. PCL-gelatin grafts (2-mm inner diameter) were fabricated using standard electrospinning parameters of +20/−1 kV electrode voltages, 500 rpm mandrel rotation and a flow rate of 4 mL/h [25 (link)].
Cell culture: PCL-gelatin grafts were secured inside a resin printed bioreactor chamber, filled with EBM-2 medium. ECFCs at a cell density of 1 × 106 were seeded into the graft lumen and allowed to attach for 1 h. Pulsatile flow was generated using a Welco WP10-P1/8 peristaltic roller pump. Pressure characterisation was performed using a PendoTech PREPS-N-012 in-line strain gauge pressure sensor. After 24 h, the graft was harvested from the bioreactor, and fixed with 10% formalin (Sigma, HT501128). For CD31 staining, the sample was first permeabilised in 0.1%Triton-X diluted in PBS and blocked with 5% BSA. The cells were then stained using AlexaFluor 488 conjugated anti-CD31 antibody (Abcam, ab215911) at 1:500 dilution with PBST and counter-stained with DAPI (ThermoFisher, R37605). The cells were then visualised under a fluorescent microscope at Ex/Em: 495/519 nm.
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10

Acoustic Simulation of Porcine Gelatin Phantom

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The irradiation layout considered in the acoustic simulations is shown in Figure 3 where the dose absorbing material used in this study is made of porcine gelatin (10 g/100 ml, G2500, Sigma-Aldrich). A series of CT images of the phantom were acquired and used to determine the material specifications for the acoustic simulation mimicking the experimental setup. According to the electron density of the homogeneous phantom, it was designed to be equivalent to brain tissue as listed in Table 128 (link). The initial pressure source was defined using the pressure-dose relation (Eq. 4), with a 0.22 Grüneisen coefficient based on the CT number of the gelatin phantom 29 (link).
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