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26 protocols using lysis buffer

1

Quantitative analysis of MOR and hOR13A1 expression

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The Hana3A cells were seeded on six-well plates and transfected with MOR256–3, MOR256–3T161P, MOR256–3T161P T148A mutant, hOR13A1 and chimeric hOR13A1/OR10-TM4 constructs. 24 h after transfection, the proteins were extracted using lysis buffer (Sangon Biotech) containing PMSF, protease inhibitor and RIPA. The cell lysates were boiled for 5 minutes with 5×SDS-PAGE (Yeason Biotechnology), then centrifuged at 4 °C for 15 min at 12,000 r.p.m. to collect the supernatants. Protein samples were subjected to SDS/PAGE (Invitrogen, Carlsbad, CA) in 8–12% gradient gels and then transferred to PVDF membranes. Blots were incubated with primary antibodies including mouse anti-rhodopsin (clone 4D2, 1:1000, MABN15, Sigma) and mouse anti GAPDH (1:2000, ab8245, Abcam) overnight at 4°C, followed by anti-mouse IgG, linked with HRP (1:2000, 7076S, CST) for 2 h at room temperature. Proteins were assessed with ECL detection reagents (WBKLS0050; Millipore), and immunostained bands were visualized with an automated chemiluminescence image analysis system (Tanon-5200). The band intensities were quantified using Image J software, and defined as ratio between Rho and GAPDH.
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2

Western Blot Analysis of EMT and p53 Markers

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Briefly, cells were washed with phosphate buffered saline (PBS) before harvesting with lysis buffer (Sangon Biotech, Co., Ltd., Shanghai, China). Protein was separated by SDS‐PAGE and transferred to a Polyvinylidene Fluoride (PVDF) membrane. Non‐specific binding was blocked with Tris Buffered Saline Tween (TBST) containing 5% (w/v) non‐fat dried milk. The membrane was then incubated with rabbit anti‐ATF3 (1:1000; Abcam, Cambridge, MA, USA), rabbit anti‐α‐catenin (1:50000; Abcam), rabbit anti‐E‐cadherin (1:10000; Abcam), rabbit anti‐Vimentin (1:2000; Abcam), rabbit anti‐Fibronectin (1:1000; Abcam), rabbit anti‐p53 (1:1000; Abcam), rabbit anti‐MDM2 (1:1000; Abcam), rabbit anti‐Bax (1:1500; Abcam), rabbit anti‐Slug (1:1000; Abcam), rabbit anti‐Snail1 (1:1000; Abcam), rabbit anti‐Twist (0.5 μg/mL, Abcam) and rabbit anti‐GAPDH (1:500; Abcam) at 4°C overnight. Next, membranes were incubated overnight with an Horseradish Peroxidase (HRP)‐conjugated goat anti‐rabbit IgG (1:10000; Abcam) for 1 hour at 37°C. The membranes were developed with an Emitter‐Coupled Logic (ECL) chemiluminescence detection kit and quantitated using ImageJ software. GAPDH served as a loading control.
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3

Western Blot Analysis of Kidney and Aortic Tissues

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Kidneys and aortic tissues were extracted and homogenized in lysis buffer (Sangon). Then, they were collected by centrifugation at 4°C for 10 min, and supernatants were collected for analysis of protein concentration by BCA Protein Assay Kit (Thermo Fisher). Total protein was added onto sodium dodecyl sulfate–polyacrylamide gel electrophoresis gel (Sangon), and proteins were then transferred onto polyvinylidene fluoride membranes (Thermo Fisher). After blocking, the membranes were incubated with primary antibodies at 4°C overnight, respectively (Supplementary Table 1). After washing, membranes were incubated with secondary horseradish peroxidase–conjugated antibodies (Cell Signaling Technology, 1:2,000) and then detected by ECL Substrates (Millipore).
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4

Western Blot Analysis of Adipogenic Markers

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Western blot analysis was performed according to the published method [14 (link)]. After incubated with 4 mg mL−1 SQWP-2 for 24 h, 3T3-L1 cells incubated in lysis buffer (Sangon, Shanghai, China) on ice for 20 min. Cytolyte supernatant was collected and protein content was estimated after centrifugation at 10,000× g (4 °C, 20 min). Protein samples (10 μg) were separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes. After blocking with 5% skim milk in Tris-buffer salt containing 0.1% Tween-20 (TBST) for 1 h, anti-PPARγ, anti-C/EBPα, anti-CCAAT/enhancer-binding protein beta (C/EBPβ), anti-CCAAT/enhancer-binding protein delta(C/EBPδ), anti-Sterol regulatory element-binding protein-1c (SREBP1C) and anti-adipocyte protein 2 (AP2) and anti-β-actin antibodies (Sangon, Shanghai, China) were added in combinations and the cells were incubated for 2 h at room temperature and washed with TBST. Horseradish peroxidase (HRP)-labeled secondary antibodies were added for 1 h, after which cells were washed with TBST for 10 min. Signals were detected by ELISA Pico chemiluminescent substrate (Sangon, Shanghai, China).
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5

Western Blot Analysis of Protein Expression

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Western blotting of five proteins was conducted as described in our previous study (24 (link)). Briefly, cells and xenografts were washed in phosphate-buffered saline (PBS) and incubated in lysis buffer (Sangon Biotech, Co., Ltd., Shanghai, China). Protein was separated by 12% SDS-PAGE and transferred to a PVDF membrane (Sangon Biotech). Non-specific binding sites were blocked by incubation with TBST containing 5% (w/v) non-fat dried milk. Next, the membrane was incubated with rabbit anti-human Akt, p-Akt, KLF-4, ERK or p-ERK (1:1,000 dilution) primary antibodies at 37°C for 1 h. Subsequently, membranes were incubated overnight with an HRP-conjugated anti-rabbit IgG secondary antibody (1:1,000 dilution) at 4°C. Signals were visualized by an ECL chemiluminescence detection kit and semi-quantitated using ImageJ software. Equal protein loading was assessed by the expression of GAPDH.
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6

Alkaline Phosphatase Activity Assay in MC-3T3-E1 Cells

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MC-3T3-E1 cells were cultured in DMEM medium at an initial density of 2×104 cells/well in 24-well culture plates and collected from each well after 3 days ES stimulation as described above. After the different frequency ES stimulation, the cells were assayed for ALP activity with a p-Nitrophenyl Phosphate (pNPP) Liquid Substrate System (Sigma) following the manufacturer’s instructions. First, cells were lysed in a lysis buffer (Sangon) and incubated for 30min at 37°C and centrifuged at 12,000g force for 10min at 4°C. The clear cell lysis was transferred into a new 1.5ml centrifuge tube for the following ALP assay. Add 10μl clear cell lysis into a 96-well transparent plate. Add 200 μl of pNPP solution to each well. Incubate the plate in the dark for approximately 30 minutes at room temperature. After the incubation period, read the plate at 405 nm on a multiwell plate reader (Tecan M200). The enzymatic activity was expressed as mmoles of p-NP/min/mg Protein.
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7

Western Blot Analysis of Cell Signaling Proteins

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Cells were first lysed in lysis buffer (Sangon Biotech Co., Ltd., Shanghai, China) and then total protein was extracted. Followed by protein concentration was measured by the bicinchoninic acid method. Equal aliquots (20 µg protein per lane) of protein lysate were separated by 8–12% SDS-PAGE and transferred to a polyvinylidene difluoride membrane. Subsequent to blocking with 5% skimmed milk at 37°C for 1 h, Western blots were probed with primary antibodies against nuclear factor (NF)-κB (1:1,000; cat no. ab32360; Abcam, Cambridge, MA, USA), Akt (1:1,000; cat no. ab126811; Abcam), cyclin B (1:1,000; cat no. ab18221; Abcam), P53 (1:1,000; cat no. ab21985; Abcam), growth arrest and DNA damage inducible β (GADD45B) (1:1,000; cat no. ab128920; Abcam) and β-actin (1:1,000; cat no. ab6276; Abcam) overnight at 4°C. Three consecutive washes were performed for 10 min in PBS-Tween, followed by incubation with the alkaline phosphatase-conjugated goat anti-rabbit IgG secondary antibody (1:5,000; cat no. ab6722; Abcam) diluted in 5% skimmed milk at room temperature for 1 h. The immunoblots were visualized with enhanced chemiluminescence (GE Healthcare, Chicago, IL, USA) and autoradiography. The experiments were repeated three times, and the results were detected using the Image Lab software (version 4.1; Bio-Rad Laboratories, Inc.) on ChemiDoc MP imaging system (Bio-Rad Laboratories, Inc.).
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8

Cell Sheet Fabrication and Quantification

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To create the cell sheet, the released cells were seeded at 4×104 cells/cm2 into flasks cultured in 10 ml of MEM-α supplemented with 10% FBS (Gibco, Thermo Fisher Scientific Inc.) for a minimum of 1 week. Cells were maintained at 37°C in a humidified atmosphere with 5% CO2, and the medium was replaced daily. After 1 week, the layered BMSCs were formed. The cells were then rinsed with phosphate-buffered saline (Gibco) twice, and then lifted as a cell sheet using a scraper (Fig. 1) (12 (link)). Cell proliferation was determined by DNA content assay using a fluorescent dye Hochest 33258 (Sangon Biotech Co., Ltd., Shanghai, China). The MSC sheets were harvested and stored at −20°C until the assay was performed. For the DNA content assay, the cells were thawed at room temperature and homogenized in 1 ml of lysis buffer (50 mM Tris-HCl, pH 7.6, 0.1% v/v Triton X-100; Sangon Biotech Co., Ltd.). The lysate was sonicated on ice for 30 sec. After centrifugation, the supernatant was collected for measurement. Cells (~4.8×106) were contained within a single cell sheet, as determined by DNA quantification using an PerkinElmer LS 55 Fluorescence(PerkinElmer, Inc., Waltham, MA, USA) and the fluorescent dye, Hoechst 33258 (13 (link)).
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9

Connexin Expression Analysis in Transfected Cells

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Cx50WILD-transfected, Cx50V44A-transfected, EGFP-transfected HeLa cells and human retinal epithelial cells (ARPE-19, ATCC) were seeded in 100-mm dishes for 24 h. ARPE-19, which has been reported to express Cx43 [10] (link), served as a control. The cells were collected in ice-cold PBS and were then centrifuged at 1000 rpm at 4°C for 5 min. After removing the supernatant, total protein was extracted from the cells with a lysis buffer (Sangon Biotech, Shanghai, China). After incubation on ice for 30 min, the extracts were centrifuged at 14,000 rpm at 4°C for 15 min. Then, the supernatant of each sample was transferred to a fresh tube and boiled with a protein-loading buffer (Sangon Biotech). The proteins were separated by 10% SDS-polyacrylamide gel electrophoresis, transferred to polyvinylidene difluoride membranes and blotted with anti-Cx43 rabbit polyclonal antibody (1∶200 dilution, Santa Cruz) and anti-GAPDH rabbit monoclonal antibody (1∶5000 dilution, Cell Signaling Technology, USA). After incubation in fluorescent secondary antibodies (1∶5000 dilution, Cell Signaling), the blots were analyzed using the Bio-Rad ChemiDoc MP imaging system. The target protein expression levels were normalized relative to GAPDH expression.
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10

Western Blot Analysis of Apoptosis Markers

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Total protein was collected using lysis buffer (Sangon Biotech). The concentration of protein solution was quantified with BCA Protein Assay Kit (Sangon Biotech). Proteins were separated by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis. Then, the proteins were transferred onto PVDF membrane (Sangon Biotech). Subsequently, proteins were incubated with the special primary antibodies: B-cell lymphoma-2 (Bcl-2; catalog on ab196495, 1:1000), BCL2-Associated X (Bax, catalog no ab32503, 1:5000), cleaved-caspase3 (catalog no ab49822, 1:500), STAT3 (catalog no ab119352, 1:5000), phospho-STAT3 (catalog no ab76315, 1:2000) and GAPDH (catalog no ab9485, 1:2500) purchased from Abcam (Cambridge, MA, U.S.A.), and protein kinase B (AKT) (catalog no. SAB4500799), phospho-AKT (catalog no. SAB4503853) purchased from Sigma-Aldrich.
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