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Image pro plus software 6

Manufactured by Media Cybernetics
Sourced in United States, Japan, Germany, China

Image-Pro Plus software 6.0 is a comprehensive image analysis software. It provides tools for acquiring, processing, measuring, and analyzing digital images. The software supports a variety of image formats and enables users to perform various image-related tasks.

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182 protocols using image pro plus software 6

1

Wound Healing and Cell Invasion Assays

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For the wound-healing assay, 2×105 cells were cultured until confluent (100%). The cell monolayer was then scratched with a 200-µl pipette tip and the cells were washed three times with PBS. Fresh growth medium was subsequently added. The wounded area was monitored every 24 h under a microscope (DFC450; Leica Microsystems, Inc., Buffalo Grove, IL, USA) and the degree of wound healing induced by cell migration was quantified using Image-Pro Plus software 6.0 (Media Cybernetics, Inc., Rockville, MD, USA).
For cell invasion analysis, 5×104 cells in serum-free DMEM (GE Healthcare Life Sciences, Logan, UT, USA) were plated in the upper membrane of Transwell inserts (8 mm) coated with Matrigel (BD Biosciences, Franklin Lakes, NJ, USA). After 24 h, the cells on the upper membrane were removed with a cotton swab and the cells that had invaded into the lower chamber with DMEM plus 10% FBS were stained with Wright-Giemsa. Images of cells were captured under a light microscope (DS-Ril Nikon; Nikon Corporation, Tokyo, Japan) and stained cells were counted by Image-Pro Plus software 6.0 (Media Cybernetics, Inc.).
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2

Estimation of Myocardial Infarct Size

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Infarct size was estimated by triphenyl tetrazolium chloride (TTC) staining. The hearts were excised and incubated with 10% KCl solution. After freezing at –20 °C, the hearts were sectioned into slices and stained with 1% TTC solution (Solarbio Science & Technology Co., Beijing, China) at 37 °C for 10–15 min in the dark. The images of these slices were obtained using a digital camera. The infarct area and total area were analyzed by Image-Pro Plus software 6.0 (Media Cybernetics, Inc., Rockville, MD, USA).
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3

Histological Analysis of Broiler Ilea

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After fixation in 4% paraformaldehyde for 24 h, the ilea were soaked through a graded series of ethanol and xylene, embedded in paraffin, and sectioned at 5 μm with a Lecia RM2235 microtome (Leica Biosystems Inc., Buffalo Grove, IL). The sections were deparaffinized with xylene and rehydrated through graded dilutions of ethanol and stained with hematoxylin and eosin. The images of ilea were acquired using an Olympus simon-01 microscope (Olympus Optical Co., Ltd., Beijing, China). The values of villus height and crypt depth were measured 5 times from different villus and crypts per section from each broiler using the Image-Pro Plus software 6.0 (Media Cybernetics, Inc., Washington, DC). The average value of the 5 villus and crypts represent the value of each ileum sample.
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4

Immunohistochemical Analysis of Mouse Tumors

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Mouse tumors were isolated and fixed with 4% paraformaldehyde, followed by preparing paraffin sections, deparaffinization, antigen retrieval, blocking, and incubating tumor tissues with antibodies against mouse CD31 and F4/80 (CST, United States) overnight at 4°C. The following steps were performed as informed in the rabbit two-step detection kit (ZSGB-BIO, Beijing, China). Briefly, after the primary antibody was bound to the antigen in the tissue, HRP-conjugated antibodies were added separately, using DAB as the chromogenic reagent. The images were collected using an optical microscope (Zeiss, Oberkochen, Germany), and the data were analyzed using Image-Pro Plus software 6.0 (RRID:SCR_016879, Media Cybernetics, United States).
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5

Western Blot Analysis of Bak and c-PARP Proteins

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Cells were collected and resuspended in RIPA lysis buffer for 60 min incubated on ice. After centrifuging for 20 min at 12000g and 4°C, the supernatant was collected. Protein concentrations were determined by using Bicinchoninic Acid Protein Assay kit (Thermo Fisher Scientific, Rockford, IL, USA). 60 μg of protein was separated on a 10% SDS-PAGE gel and transferred onto a polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA). The membrane was rinsed with TBST and incubated in 5% nonfat milk diluted with TBST at 37°C for 2 h. The membrane was then incubated with mouse anti-Bak (1:1000 dilution, Cell signaling technology), mouse anti-c-PARP (1:1000 dilution, Cell signaling technology), and mouse anti-GAPDH primary antibodies (1:3000 dilution, Santa Cruz, Dallas, Texas, USA) respectively overnight at 4°C. After washing with TBST 3 times for 15 min each time, the membrane was incubated with the appropriate secondary antibodies for 1 hour at 37°C. The membranes were then washed with TBST 4 times for 10 min each time and visualized the bands by using an ECL kit (Millipore, Billerica, MA) in a Gel Doc™ XR+ and ChemiDoc™ XRS+ System (BioRad, Hercules, CA). Image-Pro plus software 6.0 (Media Cybernetics, Rockville, MD, USA) was used to analyze the relative protein expression which was normalized to GAPDH.
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6

Western Blot Analysis of Spry2 Protein

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Tissues and cells were lysed in cold radioimmunoprecipitation assay lysis buffer. The proteins were separated with 10% SDS-PAGE, and transferred onto a polyvinylidene difluoride (PVDF) membrane. The PVDF membrane was incubated overnight with phosphate-buffered saline containing 5% milk at 4°C. Following incubation, the PVDF membrane was incubated with monoclonal mouse anti-human Spry2 (1:200; ab60719) and monoclonal mouse anti-human GAPDH primary antibodies (1:200; ab125247; Abcam, Cambridge, UK) at room temperature for 3 h, and then incubated with polyclonal rabbit anti-mouse secondary antibodies (1:5,000; ab175743; Abcam) at room temperature for 1 h. An electrochemiluminescence kit (Pierce Chemical, Rockford, IL, USA) was then used to perform chemiluminescent detection. The relative protein expression was analyzed by Image-Pro plus software 6.0 (Media Cybernetics, Inc., Rockville, MD, USA) and was presented as the density ratio versus GAPDH.
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7

Histological Tissue Analysis with IHC

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Paraffin embedded tissue blocks were cut at a thickness of 5 μm and stained with hematoxylin and eosin (HE) for pathological assessment. Fixed sections were dewaxed and hydrated before antigens recovery by repeated cooling and heating. Sections were incubated in the indicated primary and secondary antibodies for detection of positive particles by diaminobenzidine (DAB). Color development was observed using a digital camera (Olympus, Tokyo, Japan) and calculated using Image-Pro Plus software 6.0 (Media Cybernetics, Silver Spring, MD, USA).
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8

Orthotopic Lung Tumor Model for NSCLC

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PC-9/G cells stably expressing GFP were used to generate subcutaneous tumor in nude mice. Then tumor tissue was trimmed and cut into small pieces of 1 mm in diameter and stored in RPMI1640 medium. The trimmed tissues were transplanted into lungs by surgical orthotopic implantation. One week after tumor implantation, the mice were randomly divided into 5 groups by body weight without investigator blinding and treated with solvent control, gefitinib (200 mg/kg), osimertinib (2 mg/kg), gefitinib (200 mg/kg) plus PF-4708671 (75 mg/kg), and osimertinib (2 mg/kg) plus PF-4708671(75 mg/kg). Gefitinib or osimertinib was given by oral gavage and PF-4708671 was given through intraperitoneal injection daily for 4 weeks. Tumor growth and metastasis were visualized by fluorescence imaging using Image-Pro Plus software 6.0 (Media Cybernetics Inc., Bethesda MD, USA).
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9

Western Blot Analysis of Autophagy Proteins

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A total 60 µg of proteins were separated on 15% sodium dodecyl sulfate polyacrylamide gel electrophoresis, (PA003D; Auragene, Changsha, People’s Republic of China) transferred to polyvinylidene fluoride membranes (Millipore, Bedford, MA, USA) and probed with primary antibodies: anti-LC3B antibody (Abcam, Hong Kong), anti-Beclin1 antibody (Epitomics, Hong Kong), anti-STMN1 antibody (Abcam), anti-phosphoinositide 3-kinase (anti-PI3K) antibody (Santa Cruz Biotechnology, Dallas, TX, USA), anti-P-PI3K (Santa Cruz Biotechnology), anti-mammalian target of rapamycin (mTOR) antibody (Abcam), anti-p-mTOR (Abcam), anti-S6K (Abcam), anti-P-S6K antibody (Abcam), or anti-β-actin antibody (Boster, Wuhan, People’s Republic of China) at 4°C for one night, and followed by secondary antibodies conjugated with horseradish peroxidase at room temperature for 1 hour. The protein bands were visualized by the Amersham ECL system (RPN998, GE, Fairfield, CN, USA) and scanned. Data was analyzed by densitometry using Image-Pro plus software 6.0 (Media Cybernetics, Rockville, MD, USA) normalized to β-actin expression.
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10

Immunohistochemical Analysis of Apoptosis Signaling

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Paraffin sections were completely melted in an electrothermal constant temperature oven and dewaxed in xylene. After dehydration with ethanol, endogenous peroxidase activity was blocked by 3% hydrogen peroxide solution. Citrate buffer (pH 6.0) was used to recover the antigens by cooling and heating repeatedly. The sections were then blocked with 5% bovine serum albumin (BSA) and incubated overnight with primary antibodies including TNF-α (1:100), IFN-γ (1:100), Bid (1:50), Caspase 8 (1:100), Caspase 9 (1: 50), TRADD (1:100), p-FADD (1:50), Bcl-2 (1:50), p-JAK2 (1:100), p-STAT1 (1:100). On the second day, the slices were washed three times and incubated with secondary antibodies. Diaminobenzidine (DAB) was applied to show positive particles. Color development was observed using a digital camera (Olympus) and calculated using Image-Pro Plus software 6.0 (Media Cybernetics, Silver Spring, MD, USA).
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