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16 protocols using ecl chemiluminescent substrate

1

Western Blot Analysis of Hippocampal Proteins

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Protein concentrations of NLRP1, caspase-1, and GSDMD-N in the hippocampus were assessed via Western blot analysis. Total proteins were extracted from hippocampal tissues using protein extraction reagents. Following treatment with 10% SDS-PAGE, the proteins were transferred onto a PVDF membrane. The membranes were then incubated with specific primary antibodies at 4 °C overnight, as follows: anti-NLRP1 (1:1000; rabbit. no. ab3683, Abcam), anti-caspase-1 (1:1000; rabbit, ab179515, Abcam), and anti-GSDMD (1:1000; rabbit, PA5-30823, ThermoFisher). The membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (1:5000; mouse, SA00001-1, Proteintech). β-actin was used as an internal control. Western blot bands were visualized using the ECL Chemiluminescent Substrate and quantified using Quantity One v4.6.6 image analysis software (Bio-Rad, USA).
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2

Western Blot Analysis of Ramos CD20KO B Cells

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Cells were collected and immediately lysed in 2× Laemmli or RIPA buffer. Equal amounts of cleared lysates were subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis on 10%, 12%, or gradient (10–15%) mini precast gels (7bioscience) and to subsequent immunoblotting on polyvinylidene difluoride membrane (GE Healthcare Amersham) and blocked with 5% BSA in PBS and 0.1% Tween 20. A horseradish peroxidase-conjugated goat anti-rabbit or goat anti-mouse antibody was used as secondary antibody before detection with ECL chemiluminescent substrate (Bio-Rad). Lysates were taken from independently generated Ramos CD20KO B cell lines; n > 3. Details of primary antibodies are shown in Dataset S4.
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3

Kinase Assay for Rubicon Phosphorylation

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HUNK recombinant protein (ThermoFisher Scientific) was bound to Pierce Glutathione agarose (ThermoFisher Scientific) prior to kinase assay. Kinase was pre-incubated for 30 min at 30°C with DMSO or HSL119 and ATP (100 μM) in kinase buffer (20mM HEPES (ThermoFisher Scientific) pH 7.3 and 2 MgCl (ThermoFisher Scientific)) before non-phosphorylated Rubicon peptide (Sino Biological, SinoA9816: Ac-KDIRWLSPHSALHC-NH2) was added. Kinase reactions were then incubated at 30°C for an additional 30 min. Phosphorylated Rubicon peptide (Sino Biological, SinoA9815: Ac-KDIRWL(pS)PHSALHC-NH2) was used as a positive control for antibody detection. Reactions were dotted on 0.2 μm nitrocellulose membrane (Biorad) using bio-dot microfiltration apparatus (Biorad), probed with a phospho-specific antibody to S92 on Rubicon (p-S92) overnight in 4°C, and imaged on the FluorChem-R or Biorad ChemiDoc imaging systems using ECL chemiluminescent substrate (Biorad).
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4

Western Blot Analysis of Chondrocytes

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After pretreatment of chondrocytes, the cells were lysed with the lysate reagent which containing RIPA lysis buffer, phosphatase inhibitors, and protease inhibitors. Then collected the cells and lysate mixture into EP tubes for further lysing with an ultrasonic disruptor. Collected the supernatant after centrifugation and measured the concentration of protein samples with a microplate reader. Next, the protein samples were cooked at 100°C for 5 min after thoroughly mixed with the loading buffer. Total protein samples were loaded on the SDS-PAGE with 5% acrylamide in the stacking gel and 8.0–12.5% in the separation gel for electrophoresis. Then proteins were transferred to PVDF membranes. After 1 h of blocking with 5% skim milk, the membranes were incubated with primary antibodies overnight at 4°C and incubated with the corresponding proportion of secondary antibodies for 1 h at 25°C. Finally, a exposure system (Bio-Rad, Hercules, CA, USA) was employed to visualize the target protein bands with the assistant of ECL chemiluminescent substrate (Bio-Rad, Hercules, CA, USA).
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5

Oroxin B Induces Autophagy Inhibition

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Oroxin B (OB, HY-N1435, purity: 99.71%, CAS number: 114482-86-9), Dimethyl sulfoxide (DMSO, HY-Y0320, purity: ≥99.0%, CAS number: 67-68-5), and autophagy inhibitor 3-methyladenine (3-MA, HY-19312, purity: 99.83%, CAS number: 5142-23-4) were acquired from MedChemExpress (Monmouth Junction, NJ, USA). Recombinant mouse IL-1β was purchased from R&D systems (Minneapolis, USA). Boster (Wuhan, Hubei, China) provided the RIPA lysis buffer, protease inhibitors, phosphatase inhibitors, BCA protein assay kit, protein loading buffer, rabbit/mouse secondary antibodies, and DAPI reagent. The ECL chemiluminescent substrate was obtained from Bio-Rad (Hercules, CA, USA). The biotechnology of Biosharp Life Sciences (Hefei, Anhui, China) provided the Trypsin (BL527A) and collagenase II (BS164). DMEM/F12 medium culture was got from Hyclone (Logan, UT, USA). Foetal bovine serum (FBS) was purchased from BioInd (Biological Industries, Israel). Omega Bio-tek (USA) provided the RNA extraction kit (R6834-01). Yeasen (Shanghai, China) provided the kits for complementary DNA (cDNA) synthesis (11141ES60) and quantitative real-time polymerase chain reaction (RT-qPCR) (11201es08).
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6

EBOV Glycoprotein Detection by Western Blot

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To detect EBOVpp production, purified EBOVpp were processed using RIPA buffer (Sigma) supplemented with cOmplete Mini Protease Inhibitor Cocktail (ROCHE; Basel, Switzerland) and the protein concentrations were determined using the Bio-Rad Protein Assay kit (Bio-Rad Laboratories; Hercules, CA, USA). Following which, samples were resolved by sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE) electrophoresis and transferred onto a nitrocellulose membrane by standard Western blotting techniques. The blots were then probed using the primary anti-EBOV GP (subtype Zaire, strain Mayinga 1976) rabbit polyclonal antibody (Sino Biological; Beijing, China) at 1:1000 dilution, and HIV-p17 monoclonal antibody (Santa Cruz Biotechnology; Dallas, TX, USA) at 1:200 dilution, followed by the respective horseradish peroxidase (HRP)-conjugated secondary antibodies (Abcam; Cambridge, United Kingdom) at 1:3000 dilution and detection using ECL chemiluminescent substrate (Bio-Rad Laboratories). Images were taken with a ChemiDoc-ItTS2 imager (UVP; Upland, CA, USA).
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7

Western Blot Protein Analysis

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Equal amounts of protein from each sample were separated on SDS-PAGE gels and transferred to PVDF membranes (Bio-Rad, Hercules, CA). The membranes were blocked with 5% skim milk in TBST buffer (20 mM Tris, 137 mM NaCl, and 0.1% Tween 20, pH 7.4) for 30 min at RT and incubated with the appropriate primary antibody overnight at 4 °C. After several washes with TBST, the membranes were incubated with the corresponding IgG-HRP secondary antibodies at a dilution of 1:10,000 for 1 h at RT, washed, and visualized with the ECL chemiluminescent substrate (Bio-Rad, Hercules, CA). Unedited, expanded western blots provided in Supplementary Information. Several western blots were cut prior to antibody hybridization for reagent conservation.
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8

Western Blot Analysis of Bcl-2 and Bcl-xL in Stimulated DCs

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Cellular lysates of unstimulated and BCG-stimulated DCs were prepared with the help of a M2 lysis buffer. Protein concentration in lysates was determined with Pierce BCA protein assay kit. 10–15 µg protein was loaded per well in 12% polyacrylamide gel and resolved at 30 mA. Subsequently, proteins were transferred onto 0.2 µm PVDF membrane at 120 mA for 2 h. Membranes were blocked overnight with 1% bovine serum albumin in Tris-buffered saline (TBS) at 4°C and thereafter, probed with anti-Bcl-2 (1:1000), anti- Bcl-xL (1:2000) and anti-beta-actin (1:10,000) antibodies (Cell Signaling Technology, cat no. 2876, 2764 and 8457, respectively). After washing with TBST, membranes were incubated with secondary antibodies at 25°C for 2 h. After repeated washing, blots were developed using ECL chemiluminescent substrate according to instructions given by the manufacturer (Bio-Rad) and images were acquired using ChemiDoc Imaging System. Densitometry was performed using ImageJ software (NIH).
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9

HA-tagged Protein Expression Validation

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Synchronized abH112 cKD ring stage parasites were cultured in presence and absence of aTC for 72 hours. Cultures were harvested and RBCs were lysed using 0.05% saponin in 1×PBS at 4°C. Parasites were washed two times with cold1×PBS containing cOmplete proteases inhibitors (4693159001, Sigma) and pellets were resuspended in SDS buffer (8 M Urea, 5% SDS, 50 mM Bis-Tris, 2 mM EDTA, 25 mM HCl, pH 6.5) and Laemmli buffer. Protein samples were run on 10% Mini-PROTEAN® TGX Precast Gels (Biorad) and transferred onto nitrocellulose membranes (Biorad). The membrane was blocked in 3% BSA-TBS and probed with either mouse anti-HA (1: 1000) or rabbit anti-Bip followed by HRP conjugated secondary antibodies. Protein blots were developed using ECL Chemiluminescent Substrate and imaged and analyzed by ChemiDoc MP Imaging System (Biorad).
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10

Protein Extraction and Western Blotting

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The midbrain and the striatum tissue lysates were prepared in RIPA buffer. Protein extraction from supernatants was performed using a ReadyPrepTM protein extraction kit (Catalogue No. #163–2086, Bio-Rad Inc.). Protein was determined in samples using the Bradford Protein Assay Kit (Catalogue No. #SK3041, Markham, Ontario, Canada). Equal protein concentrations from all samples were loaded with sample buffer 4% SDS, 10% 2-mercaptoethanol, 20% glycerol, 0.004% bromophenol blue, and 0.125 M Tris HCl. After boiling for 5 min, samples were loaded on polyacrylamide gel (SDS-PAGE) (Catalogue No. #161–0181, Bio-Rad Inc). A sandwich of PVD and gel was transferred with transfer buffer (25 mM Tris, 190 mM glycine, and 20% methanol), allowing transfer from the gel to the membrane using the BioRad Trans-Blot Turbo apparatus. After membrane blocking for 1 h, incubation with primary antibodies was performed at 4 °C. Afterwards, the solution was added to the HRP-conjugated secondary antibody (Novus Biologicals, USA). Then, the ECL chemiluminescent substrate (Catalogue No.# 170–5060, Bio-Rad, Inc.) was added. The chemiluminescence was captured, and image analysis was performed against β-actin using a ChemiDoc MP imager.
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