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6 protocols using rpmi 1640 containing l glutamine

1

Culturing P. falciparum Strains Expressing VAR2CSA

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P. falciparum FCR3CSA, NF54CSA, and 7G8CSA strains expressing VAR2CSA were cultured under standard conditions in O+ RBC in RPMI 1640 containing L-glutamine (Invitrogen France) supplemented with 5% Albumax I, 5% Human plasma, 1× hypoxanthin, and 20 μg/mL gentamicin [52 (link)]. Parasitemia was routinely monitored by a thin blood smear fixed with 100% methanol for 1 min before staining in 10% vol/vol Giemsa (Sigma-Aldrich) in phosphate-buffered saline for 15 min. Genomic DNA extracted from parasite cultures was regularly tested for Mycoplasma contamination (look out Mycoplasm PCR detection kit; Sigma). Parasite cultures were routinely selected by gelatin flotation using Plasmion (Fresenius Kabi France) to maintain knob-positive parasites [53 (link)].
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2

Naïve B cell differentiation protocol

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Purified naïve B cells were cultured in B-cell medium (RPMI 1640 containing L-glutamine; Invitrogen Life Technologies, CA, USA), supplemented with 10% fetal calf serum (FCS) (Invitrogen Life Technologies, Waltham, MA, USA), 10 mM 4-(2-hydroxyethyl)-1-piperazineethansulfonic acid (HEPES) (pH 7.4; Sigma-Aldrich, St Louis, MO, USA), 0.1 mM nonessential amino acid solution (Sigma-Aldrich), 1 mM sodium pyruvate (Invitrogen Life Technologies), 60 mg ml−1 penicillin, 100 mg ml−1 streptomycin, 40 mg ml−1 transferrin (Sigma-Aldrich), and 20 μg ml−1 Normocin (InVivogen, San Diego, CA, USA); and stimulated with 100 ng ml−1 CD40L alone (Enzo, Farmingdale, NY, USA) or with IL-4 (100 ng ml−1), IL-21 (50 ng ml−1; both Peprotech), or CpG 2006 (1 μg ml−1, Invitrogen, Carlsbad, CA, USA), APRIL (500 ng ml−1, Adipogen, San Diego, CA, USA), in the presence or absence of IL-4 and IL-21. For some experiments, B cells were labelled with division-tracking dye cell trace violet (CTV, Invitrogen).32 (link) For phenotypic and functional analysis, cells were cultured in 96-well plates for 5 or 6 days, collected, stained with CD20, CD27, CD38, IgG, IgM, IgA and the proportion of isotype switched and differentiated antibody secreting cells determined as previously described.6 (link) Secreted IgM, IgG and IgA levels were determined by Ig Heavy chain-specific immunoassays as previously described.6 (link)
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3

Cell Lines and Culture Conditions

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THP1-Dual cells (Invivogen, catalog (cat.) no. thpd-nfis) and THP1 cells were cultured in RPMI complete medium (RPMI1640 containing l-glutamine; Invitrogen, cat. no. 11875-085), 10% v/v FBS (Invitrogen, cat. no. 26400-044) and penicillin-streptomycin (Pen/Strep, Invitrogen, cat. no. 15070-063) at 37 °C, +5% CO2. The MC38 cell line derived from C57BL/6 murine colon adenocarcinoma was acquired from the laboratories of James Hodge, PhD and Jeffery Schlom, PhD (National Cancer Institute, National Institutes of Health). The murine melanoma-derived B16-SIY cells (referred to as B16-SIY; engineered to express the model SIYRYYGL (SIY) antigen to enable immune monitoring) were acquired from the Gajewski lab (University of Chicago)47 (link). FreeStyle 293-F cells were acquired from Thermo Fisher (cat. no. R79007). Cell lines were regularly tested and maintained negative for mycoplasma.
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4

Culturing and Maintaining T Cell Clones

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Established cell lines were grown in complete medium: RPMI 1640 containing L-glutamine (Life Technologies) and supplemented with 10% heat-inactivated foetal bovine serum (Sigma-Aldrich) and 40 µg/ml gentamicin sulfate (Pfizer, Bentley, WA, Australia).
T cells were cloned and cultured in clone medium: RPMI 1640 containing L-glutamine, supplemented with 40 µg/ml gentamicin sulfate, 1 mM HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid), 100 IU/ml IL-2 (Roche Diagnostics GmbH, Mannheim, Germany) and 10% heat-inactivated pooled human serum (Australian Red Cross Blood Service). For initial sorting and restimulation, clone medium contained 1 µg/ml Phytohaemagglutinin-L (Sigma-Aldrich) and feeder cells as detailed below.
For functional assays, T cell clones and stimulator/target cells were suspended in assay medium – RPMI 1640 containing L-glutamine, 40 µg/ml gentamicin sulfate and 5% heat-inactivated pooled human serum or foetal bovine serum. All 37°C incubations were undertaken in 5% CO2.
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5

Isolation and Stimulation of B10 Cells

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Peripheral blood mononuclear cells (PBMCs) and synovial fluid mononuclear cells (SFMC) were isolated from heparin-treated PB and SF by Ficoll-Paque Plus (GE Healthcare, Uppsala, Sweden) gradient centrifugation. PBMCs and SFMCs were cultured in RPMI 1640 containing L-glutamine (Life Technologies, Paisley, UK) supplemented with 100 U/μg/ml penicillin/streptomycin (Life Technologies, Paisley, UK), and 10% fetal bovine serum in 48-well flat-bottom plates for 48 h at 37 °C in 5% CO2. According to previous study [12 (link)], combination of CpG and CD40L stimulation could generate the most of B10 cells in human. Therefore, the cultured cells were stimulated with 10 μg/ml CpG ODN2006 (Invivogen, San Diego, USA) and 1 μg/ml CD40L (R&D Systems, Minneapolis, USA), or with phosphate-buffered saline (PBS) as control. For the last 6 h, 50 ng/ml phorbol myristate acetate (PMA) and 1 μg/ml ionomycin (Sigma-Aldrich, USA) were added to the stimulated cells; Brefeldin A (BFA, eBioscience, San Diego, USA), Golgi transport blocker, was added to all wells.
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6

Culturing Isogenic Cell Lines for Autophagy Research

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Mouse embryonic fibroblast wild type (MEF) and MEF with autophagy ATG5 gene knocked out (MEF Atg 5-/-) cell lines were provided by Norwich Medical School, University of East Anglia, Norfolk UK. Human colorectal cancer cell lines HCT15 and HCT116 were obtained from the Department of Nutrition, University of Auckland. MEFs and HCT15 cells were maintained in high glucose DMEM containing sodium pyruvate and L-glutamine (Life technologies, USA). HCT116 cells were maintained in RPMI 1640 containing L-glutamine (Life technologies, USA). All media was supplemented with 10% FBS (Life technologies, USA) and 1% penicillin streptomycin (PSG; Life Technologies, USA). Experiments were conducted using DMEM containing sodium pyruvate and L-glutamine (HCT15 and MEFs) or RPMI 1640 (HCT116) (Life technologies, USA) supplemented with 10% FBS at 37°C in a humidified 5% CO2 incubator.
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