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Polyvinylidene membrane

Manufactured by Merck Group
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Polyvinylidene membranes are a type of porous membrane material commonly used in various laboratory applications. They are known for their chemical resistance, thermal stability, and ability to facilitate filtration, separation, and purification processes. The core function of polyvinylidene membranes is to act as a selective barrier, allowing the passage of specific components while retaining others, based on factors such as molecular size, charge, and chemical properties.

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52 protocols using polyvinylidene membrane

1

Western Blot Analysis of Mesenchymal Stem Cells

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T-MSCs and T-MSC-SCs were washed with ice-cold PBS and lysed in PRO-PREP buffer containing a phosphatase inhibitor cocktail solution (iNtRON Biotechnology, Seongnam-si, Korea) for 30 min on ice. After centrifugation at 13,000× g for 20 min at 4 °C, equal quantities of protein from supernatants were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE) and were electrophoretically transferred onto polyvinylidene membranes (Millipore, Billerica, MA, USA). The blots were then probed overnight at 4 °C with antibody against the glial fibrillary acidic protein (GFAP) (1:400, monoclonal antibody, Sigma-Aldrich, cat. no. G3893) or the nerve growth factor receptor (NGFR/p75) (1:500, polyclonal antibody, Santa Cruz Biotechnology, cat. no. sc8317, Dallas, TX, USA), followed by the corresponding secondary antibody. The blots were washed and developed using enhanced chemiluminescence reagents (WestSave GOLD™ Western Blot Detection kits) (AbFrontier, Seoul, Korea), according to the manufacturer’s instructions. Band intensities were assessed by densitometric scanning (LAS-3000, Fujifilm, Tokyo, Japan).
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2

Western Blot Analysis of Heme Oxygenase-1

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The tissue samples were washed twice with phosphate buffered saline (PBS), homogenized, and lysed in the RIPA buffer (Upstate, Billerica, MA) for 20 min at 4 °C. Lysates were centrifuged at 12,000 g at 4°C for 12 min and we separated supernatants for western analysis. SDS-PAGE (10% gel) was used to separated equal amount (40 mg) of cell lysates, followed by transferring them to polyvinylidene membranes (Millipore, Billerica, MA), and then probed them with antibodies against proteins of interest, including anti-Heme oxygenase1 antibody (1:1000, room temperature for 2 h, Santa Cruz Biotechnology, Santa Cruz, CA) and β-actin antibody (1:10000, room temperature for 1 h, Santa Cruz Biotechnology, Santa Cruz, CA). Appropriate horse radish peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology, Santa Cruz, CA) were adopted to incubate blots. Enhanced chemiluminescence (ECK) kit (Amersham ECL detection system, GE Healthcare) was used to visualize bound antibodies, and the relative density of the target bands was determined by using densitometry analysis.
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3

Western Blot and Immunoprecipitation Procedure

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Equal amounts of proteins were separated by SDS-PAGE, and then transferred onto polyvinylidene membranes (Millipore, SaintQuentin enYvelines, Belgium) by electrotransfer. Membranes were blocked with 5% skim milk in PBS-T (containing 0.1% Tween-20), and proteins of interest were visualized using specific Anti-Stathmin (Cell SignalingTechnology, Beverly, MA, USA), poly (ADP-ribose) polymerase (PARP) (BD Biosciences, San Jose, CA, U.S.A.), integrin β1, and integrin α5(BD Biosciences, San Jose, CA), caspase-3 (Santa CruzBiotech, CA, USA). Anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) antibody and secondary antibodies, conjugated with horseradish peroxidase (HRP), were ordered from KangChen Biotech (Shanghai, China).
For immunoprecipitation, the cells were lysed inbuffer containing 50 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1% Nonidet™ P-40 (NP-40), 5 mM EDTA, 5 mM ethylene glycol tetraacetic acid, 15 mM MgCl2, 60 mM β-glycerolphosphate, 0.1 mM sodiumorthovanadate, 0.1 mM NaF, 0.1 mM benzamide, 10 μg/ml aprotinin, 10 μg/ml leupeptin, 1 mM PMSF. Twenty microliters of protein A/Gagarose beads (BD Bioscience Pharmingen) were added to the lysates for proper periods of incubation. The beads were then washed and subjected to SDS-PAGE and immunoblotting.
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4

Western Blot Analysis of Neuronal Markers

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Protein samples from total cell extracts were washed with ice-cold phosphate-buffered solution (PBS). Protein samples were lysed in Pro-Prep buffer containing a phosphatase inhibitor cocktail solution (iNtRON Biotechnology, Seongnam-si, Korea) for 30 min on ice followed by centrifugation at 13,000× g for 20 min at 4 °C. Equal amounts of protein from each supernatant were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis and were transferred onto polyvinylidene membranes (Millipore, Billerica, MA, USA). Then the blots were probed overnight at 4 °C with monoclonal antibodies against Islet 1 (Cat. no. ab86472), HB9 (Cat. no. ab79541), or ChAT (Cat. no. ab178850) (1:500, all from Abcam, Cambridge, UK) followed by the corresponding secondary antibody. The blots were developed using enhanced chemiluminescence reagents (WestSave Gold Western Blot Detection kits; AbFrontier, Seoul, Korea). The intensity of each band was assessed by densitometric scanning (LAS-3000; Fujifilm, Tokyo, Japan). The expression level of each protein was normalized with the respect of GAPDH levels (No. LF-PA0018; 1:1000, pRb, AbFrontier). The protein levels were quantified using Multi Gauge software (version 3.0; Fuji Photo Film, Kanagawa, Japan).
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5

Western Blot Analysis of Protein Extracts

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Whole-cell extracts from cell pellets were prepared as previously described [32 (link)]. A total of 20 or 40 μg of each sample was resolved by using 5–12% gradient sodium dodecyl sulfate-polyacrylamide gel electrophoresis (ATTO, Tokyo, Japan) as appropriate and was transferred onto polyvinylidene membranes (Millipore, Burlington, MA, USA). To block nonspecific antibody binding, membranes were incubated with 2% bovine serum albumin or 5% skimmed milk in tris-buffered saline (TBS) for 1 h at room temperature. Subsequently, membranes were incubated with primary antibodies diluted in Can Get signal® primary buffer (Toyobo, Osaka, Japan) overnight at 4 °C. After being washed with TBST, membranes were incubated with horseradish peroxidase (HRP)-linked antirabbit IgG (NA934U; GE Healthcare, Arlington Heights, IL, USA) or antimouse IgG (NA931V; GE Healthcare) diluted in a Can Get signal secondary antibody buffer for 1 h at room temperature. After being washed with TBST, membranes were incubated with Pierce Western Blotting Substrate Femto (Pierce, Rockford, IL, USA) and developed on an X-ray film (GE Healthcare). Table S4 describes the antibodies and their dilution conditions. All the whole immunoblotting figures can be found in Figure S11.
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6

RTK Phospho-Protein Array and Western Blot Analysis

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For RTK phospho-protein array analysis, cell culture lysates were prepared and analyzed using a Pathscan RTK Signaling Antibody Array kit (Cell Signaling Technologies, 7949; Danvers, MA). Briefly, 100 µg lysate were loaded on an array membrane, incubated overnight at 4°C, and then washed with PBS/0.05% Tween, serially incubated for 1 h with the detection biotinylated antibody (150 μl/well; 1 × dilution) and DyLight-680-conjugated streptavidin (150 μl/well; 1 × dilution). Arrays were imaged using an Odyssey Infrared Imaging System and spot intensities were quantified using Image Studio software (Li-Cor, Lincoln, NE).
For western blots, protein cell extracts were obtained as previously described4 (link), 47 (link). Cell extracts (35 μg) were resolved on 10% polyacrylamide/SDS gels before being transferred onto polyvinylidene membranes (Millipore, Billerica, MA). Membranes were treated with primary antibodies at 1:1000 (anti-FGFR-3) or 1:2000 (anti-β actin) dilution followed by appropriate secondary anti-mouse (LICOR; 926-32220; IRDye 680LT) or anti-rabbit (LICOR; 926-32211; IRDye 800CW) antibodies (both at 1:10,000 dilution). Membranes were imaged and analyzed using an Odyssey Infrared Imaging System.
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7

Native Protein Complex Analysis

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BN-PAGE was performed using the NativePAGE Bis-Tris Gel System (Thermo Fisher Scientific). Briefly, cells expressing both reporters were harvested without TfR silencing, washed with HBS, and solubilized in NativePAGE sample buffer supplemented with 10% glycerol, 1% DDM (n-dodecyl-β-d-maltoside), 1× protease inhibitor cocktail, and 100 μg/ml DNaseI. The samples were incubated in the solubilization buffer on ice for 30 min and centrifuged (13,000 × g at 4°C, 1 h), and the resulting supernatants were either untreated or treated with 4 M urea to denature protein complexes. Samples were then fractionated on precast 4–16% BN gradient gels (Thermo Fisher Scientific). After electrophoresis, proteins were transferred to polyvinylidene membranes (Millipore) and detected by our standard immunoblotting protocol with anti-HA or anti-VSG221.
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8

Quantifying Protein Levels in Colorectal Cancer

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Western blotting assays were conducted using a previously published protocol [57 (link)]. Total proteins were extracted from CRC samples with RIPA buffer (Thermo Fisher Scientific, USA). The protein concentrations were measured with a BCA assay kit (Thermo Fisher Scientific, USA). An equivalent amount of protein from each sample was separated using SDS‒PAGE. Then, the proteins were transferred to polyvinylidene membranes (Millipore; Burlington, MA, USA). The membranes were blocked with Tris-buffered saline-0.1% Tween-20 (TTBS) supplemented with 5% skim milk for 2 h at 25 °C. The membranes were then incubated at 4 °C overnight with the following primary antibodies at the indicated dilutions: anti-CYP2W1 (1:500, PA5-101315, Invitrogen), anti-GDE1 (1:1000, PA5-43012, Invitrogen), anti-PTPN6 (1:1000, ab124942, Abcam), anti-PTTG1IP (1:500, ab128040, Abcam), anti-SEC61G (1:500, PA5-21384, Invitrogen), and anti-TRIP6 (1:500, ab137478, Abcam) antibodies. Next, the membranes were incubated with a secondary antibody, anti-rabbit IgG-horseradish peroxidase conjugate (1:4000; Cell Signaling Technology) for 1 h at 25 °C. The expression levels of the target proteins were detected using an ECL kit (Bio-Rad, USA) and analyzed via ImageJ software ((NIH V1.8.0.112, USA).
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9

Protein Extraction and Western Blot Analysis

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Wound tissues were homogenized in the RIPA buffer mixed with a protease inhibitor cocktail (Thermo Scientific) by the KZ-II tissue lapping instrument (Servicebio, Wuhan, China). Human Umbilical Vein Endothelial Cells (HUVECs) suspended in the lysis buffer with the same components were vibrated for 30 s every 10 min. The homogenates were then centrifuged at 12,000×g for 20 min at 4 °C and the supernatants were subsequently collected. Protein concentrations were determined using the Bradford assay kit (Bio-Rad, Hercules, CA, USA) and then diluted to 4 μg/μL. A total of 40 μg of protein were separated by the 4–12% gradient SDS-PAGE and transferred onto polyvinylidene membranes (Millipore, Bedford, MA, USA) at 250 mA for 90 min. After blocking with 5% nonfat milk at room temperature for 1 h, the membranes were incubated overnight at 4 °C with the primary antibody. The primary antibodies used are listed in supporting information Table S1. The next day, the membranes were incubated with a 1:5000 dilution of an HRP-conjugated anti-mouse or anti-rabbit secondary antibody (Proteintech, CHI, USA) at room temperature for 90 min. The membranes were then washed thoroughly with PBS three times and the immunoreactive bands were detected with an EZ-EL Kit (Biological Industries, Israel).
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10

Protein Expression Analysis in Prostate Cancer Cells

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The proteins were isolated from the treatment PCa cells by using RIPA buffer (Beyotime Institute of Biotechnology). The concentration of protein in each sample was evaluated with a bicinchonininc acid (BCA) Protein Assay kit (Beyotime Institute of Biotechnology). The protein samples (40 µg/lane) were subjected to 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene membranes (Millipore). Proteins were then blocked with 5% skimmed milk for 1.5 h, followed by incubated with specific primary antibodies at 4°C overnight. After washing three times with Tris Buffered saline (TBS)-0.2% Tween-20, these blots were incubated with a horseradish peroxidase-conjugated secondary antibody (Cell Signaling Technology, Inc.). Finally, the signals were visualized using an enhanced chemiluminescence assay (EMD Millipore). The grayscale values of the membranes were semi-quantified using an Image J software (version 1.52 r; National Institutes of Health). GAPDH was used as an internal control.
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