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32 protocols using 25 cm2 flask

1

Human Cell Lines Culture Protocol

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Experiments were carried out on human colon adenocarcinoma cell lines HT-29 and LS180, human colon epithelial cell line CCD 841 CoTr and human skin fibroblasts HSF. HT-29, LS180 and CCD 841 CoTr cell lines were obtained from the European Collection of Cell Cultures (Centre for Applied Microbiology and Research, Salisbury, UK). HSF were obtained with the outgrowth technique from skin explants from young volunteers in the Department of Virology and Immunology, UMCS, Lublin (Poland).
HT-29, LS180, CCD 841 CoTr and HSF cells were cultured in 1:1 mixture of DMEM and Nutrient mixture F-12 Ham. Media were supplemented with 10% fetal bovine serum (FBS), penicillin (100 U/mL) and streptomycin (100 mg/mL). The medium was changed every two days. The cells were grown in 25 cm2 flasks (Nunc, Roskilde, Denmark) and kept in a humidified atmosphere with 5% CO2 at 37 °C or 33 °C (CCD 841 CoTr).
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2

Western Blot Analysis of Protein Expression

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When 80% confluence in 25 cm2 flasks (Nunc, Roskilde, Denmark) was reached, the cells were lysed with RIPA lysis buffer (Beyotime, Shanghai, China) on ice and then centrifuged at 12000 rpm for 20 min. Supernatants were collected and protein was determined using bicinchoninic acid (BCA) kit (Boster, Wuhan, China). The extracts (20 μg per lane) were fractionated by 10% SDS-PAGE and then transferred onto PVDF membranes (0.45 μm; Millipore, Bedford, MA). After blocking with TBST buffer (20 mM Tris-buffered saline and 0.1% Tween-20) containing 5% nonfat milk for 1 h at 25°C, the membranes were incubated with primary antibodies against E-cadherin, N-cadherin (1 : 5000, Epitomics, USA), cytokeratin (1 : 400, Boster, China), EP300 (1 : 1000, Abnova, USA), and β-actin (1 : 5000, CMCTAG, USA) overnight at 4°C. Membranes were washed three times for 5 min with TBST before incubation with horseradish peroxidase-conjugated secondary antibody (1 : 3000, CST, USA) for 60 min at 25°C. The membranes were exposed by chemiluminescence (Millipore, Billerica, MA), and images were acquired by ChemiDoc XRS (Bio-Rad, Hercules, CA). Semiquantification of scanned films was performed using Quantity One-4.6.2 (Bio-Rad).
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3

Vero Cell Culture Protocol

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The Vero cell culture obtained from the cell bank of Pasteur Institute (Tehran, Iran) was grown in Dulbecco minimal essential medium in 25 cm2 flasks (Nunc, Denmark) under 5% CO2 at 36ºC for 48 hours. The culture media were supplemented with 5% FBS (fetal bovine serum GIBCO). For the maintenance, the medium was supplemented with 2% FBS. The mentioned media included penicillin and streptomycin sulphate (100 IU/mL and 100 μg/mL), respectively.5 (link)
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4

Rainbow Trout RBC Isolation and Cell Line Maintenance

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Rainbow trout RBCs were obtained and purified as previously described (4 (link), 7 (link)). Briefly, RBCs extracted from the caudal vein were purified by 2 successive Ficoll density gradient centrifugations (7,206 g, Ficoll 1.007; Sigma-Aldrich, Madrid, Spain). Ficoll-purified RBCs were maintained in 25 cm2 flasks (Nunc Roskilde, Denmark) with RPMI-1640 medium (Dutch modification) (Gibco, Thermo Fisher Scientific, Carlsbad, CA) supplemented with 10% fetal bovine serum (FBS) gamma irradiated (Cultek, Madrid, Spain), 1 mM pyruvate (Gibco), 2 mM L-glutamine (Gibco), 50 μg/mL gentamicin (Gibco), 2 μg/mL fungizone (Gibco), 100 U/mL penicillin (Sigma-Aldrich), and 100 μg/mL streptomycin (Sigma-Aldrich) at 14°C for 24 h prior to experimentation.
The RTG-2 (rainbow trout gonad-2) cell line was purchased from the American Type Culture Collection (ATCC 50643) and maintained at 21°C in MEM medium (Sigma-Aldrich) containing 10% FBS, 1 mM pyruvate, 2 mM L-glutamine, 50 μg/mL gentamicin, and 2 μg/mL fungizone.
VHSV strain 07.71 (20 ) was purchased from the American Type Culture Collection (ATCC VR-1388) and cultured in fathead minnow epithelioma papulosum cyprini (EPC) (21 (link)) cells at 14°C as previously described (22 ).
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5

Cell Treatment with Cardioplegia Solutions

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Cells were grown in 25 cm2 flasks (Nunc) to obtain full monolayer. Then they were incubated with Custodiol HTK or Plegisol for 0.5 h, 1 h, 2 h, and 4 h. After the treatment, cells with cardioplegia in-vitro were removed by trypsinizing and washed twice in PBS (IITD, PAN, Poland). Then cells suspensions (ca. 5 × 106) were centrifuged 5 min at 1500 rpm (Centrifuge MPW Med. Instruments MPW-341 with stable rotor).
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Transcriptome Profiling of LGTV Infection in HEK 293T Cells

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To characterize the host cell transcriptome profiles of the acute phase of LGTV TP21 infection, 1.5 × 106 HEK 293T cells in 25-cm2 flasks (Nunc) were infected in triplicate with Langat TP21 virus at a multiplicity of infection (MOI) of 5. For 12 h samples, 1.5 × 106 293T cells were infected at a MOI of 10. Some cells were separately exposed to heat-inactivated LGTV TP21 virus at a MOI of 10 and harvested after 12 h. Triplicate control cells were mock infected with virus-free DMEM. All infected and mock-infected cells were incubated in complete DMEM at 37°C in 5% CO2 and harvested for total RNA extraction at 12, 24, 48, 72, and 96 h postinfection (hpi). Persistently infected cells were generated as described previously (24 (link)).
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7

Isolation and Expansion of Rat MSCs

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Bone marrow-derived MSC were isolated from male Sprague-Dawley rats (200 g body weight; Charles River, UK) as described previously [23 (link)]. Whole bone marrow cells were isolated as described above, excluding the gradient centrifugation steps. Collected whole bone marrow cells were placed in 25cm2 flasks (Nunc) with an initial plating concentration of approximately 1×106 cells/cm2, cultured in αMEM (Gibco) with 20% inactivated fetal bovine serum containing 200 mM L-glutamine, 100 U/ml penicillin and 100 mg/ml streptomycin (Sigma) at 37°C in a humidified atmosphere containing 95% air / 5% CO2. The culture medium was changed every 48–72 hours. When cell confluence reached 80%, cells were passaged by using 0.25% Trypsin / 0.2% EDTA (Sigma). Plating concentrations for subsequent passages were 2.5×104 cells/cm2. MSC were used for experiments at passage 4 or 5. Viability of collected MSC before injection was always >96%.
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8

Isolation of Human Gingival Fibroblasts

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Primary human gingival fibroblasts (HGFs) were isolated from 1–2 mm fragments of healthy gingival tissue, following the procedure patented by Dominiak and Saczko [11 ]. The biopsies were provided by the Department of Dental Surgery of the Faculty of Dentistry of Wroclaw Medical University, according to the requirements of the Wroclaw Medical University Bioethical Committee (approval No KB-8/2010) and the Helsinki Declaration, as revised in 2013. Gingival tissue was obtained from patients who agreed to a voluntary tissue biopsy before the planed tooth extraction. The explants were placed in a cell culture medium (DMEM, Sigma-Aldrich, St. Louis, MO, USA) and supplemented with 10% fetal bovine serum (FBS, Sigma-Aldrich, St. Louis, MO, USA) and penicillin/streptomycin (Sigma-Aldrich, St. Louis, MO, USA) immediately after being taken by a scalpel. The cells were grown on Petri dishes (60 mm) (Nunc, Roskilde, Denmark) or in 25 cm2 flasks (Nunc, Roskilde, Denmark) in a humidified atmosphere at 37 °C and 5% CO2. For experimental reasons, they were detached by trypsinization (0.25% Trypsin-EDTA, Sigma-Aldrich, St. Louis, MO, USA).
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9

BoHV-1 Virus Propagation in MDBK Cells

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Madin-Darby Bovine Kidney (MDBK) cells were obtained from the National Centre for Cell Sciences (NCCS), Pune, India. The cells were cultured and maintained in DMEM (high glucose) (HyClone) supplemented with 10% FBS (HyClone), penicillin 100 U/mL, streptomycin 100 μg/mL at 37 °C and 5% CO2 in 25 cm2 -flasks (Nunc). An Indian isolate of BoHV-1 Virus strain (BoHV1/IBR 216 II/ 1976/India) maintained at Immunochemistry laboratory, Division of Biochemistry, IVRI, Izatnagar was used for the study.
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10

Culturing HeLa Cells in DMEM

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HeLa cells obtained from Virology Department, Iran University of Medical Sciences, Tehran, Iran were grown in 25cm2 flasks (Nunc, Denmark) in 10 ml of culture medium: Dulbecco’s modified eagle medium (DMEM; KBCell, Iran) supplemented with 10% inactivated fetal calf serum (FCS; Bovogen, Australia), 10 mM hepes and 1% penicillin- streptomycin (Biowest, France) and incubated at 37 °C in a 5% CO2 atmosphere. When a confluent monolayer was obtained, the medium changed to DMEM/hepes with 5% FCS (maintenance medium). Subculture was done weekly by adding trypsin to confluent monolayers and washing with sterile PBS (pH 7.3).
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