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Prominence hplc

Manufactured by Shimadzu
Sourced in Japan, Germany, United States

The Prominence HPLC is a high-performance liquid chromatography (HPLC) system manufactured by Shimadzu. It is designed for the separation, identification, and quantification of various chemical compounds in complex mixtures. The Prominence HPLC system utilizes a pump, autosampler, column oven, and detector to achieve accurate and reliable analytical results.

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83 protocols using prominence hplc

1

Synthesis and Characterization of AESIS-1 Peptide

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The novel small molecule peptide AESIS-1 contains 19 amino acids and has an expected molecular weight of 2121.4 Da (Peptron, Inc., Daejeon, Korea). AESIS-1 peptide was generated using the ASP48S (Peptron, Inc.), using the solid phase peptide synthesis (SPSS) method. High-purity peptide was obtained from the major fraction of the synthesized peptide pool using SHIMADZU Prominence HPLC (Shimadzu, Kyoto, Japan). Purified synthetic peptide was prepared by the freeze-drying method. Purity of synthetic peptide (>95%) was assessed by SHIMADZU Prominence HPLC and peptide molecular weight was determined by liquid chromatography–mass spectrometry (LC-MS) using the SHIMADZU LCMS-2020 (Shimadzu). The properties of AESIS-1 peptide are listed in Table 2.
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2

Fluorescent Cleavage Product Detection

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To determine if
the QSY7 cleavage products were fluorescent, digestion assay samples
were run on a Shimadzu Prominence HPLC with both UV/vis and fluorescence
detectors. The UV detector was set to monitor 235 and 245 nm, and
the fluorescence detector was set at an excitation of 545 nm and an
emission of 580 nm to monitor the intact peptides and the fragments
formed by digestion. This method used the same mobile phase and gradient
profile as Mode 2.
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3

HPLC Analysis of Fermentation Sugars

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Glucose, fructose, maltose, maltotriose and ethanol concentrations were determined by High-Performance Liquid Chromatography (HPLC) after 15 days of fermentation as previously described35 (link),48 (link). Samples were obtained extracting 0.5 mL fermented beer wort and filtered using 0.22 μm filters. Filtered samples (20 µL) were injected in a Shimadzu Prominence HPLC (Shimadzu, USA) with a BioRad HPX-87H column using 5 mM sulfuric acid and 4 mL acetonitrile per liter of sulfuric acid as the mobile phase at a 0.5 mL/min flow rate98 (link). Glucose, fructose, maltose and maltotriose uptake were estimated as the difference between the initial and final concentration before and after fermentation, respectively.
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4

HPLC and Colorimetric Analysis of Lactate and Ammonium

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Sample supernatants were thawed at room temperature and filtered with a 0.22 μm PES membrane (Millipore). Lactate concentrations were measured by high-performance liquid chromatography (Prominence HPLC, Shimadzu). One milliliter of each sample supernatant was placed with a syringe in the sampler holder and 20 μL of the sample was manually injected into the column. The column used was a Fast Fruit Juice (Waters) and H3PO4 5 mM at 0.8 mL/min was used as the eluent. The temperature of the column was maintained at 55°C with a water bath and the separated compound was detected with a refractive index detector (IOTA). Lactate known concentrations were analyzed by HPLC to produce a standard calibration curve in the same operated conditions as for sample supernatants. NH4+ concentrations were measured by using the Nessler colorimetric method. One milliliter of each sample supernatant was mixed with 1 ml of arabic gum (0.5% (w/v) and 100 μL of Nessler reagent (potasium iodomercurate and ammonia). Absorbance was read at 400 nm in a spectrophotometer (UviLine9400, SECOMAM, France) after an incubation time of 5 min. NH4+ known concentrations were analyzed as well by the Nessler colorimetric method to produce a standard calibration curve in the same operated conditions as for sample supernatants.
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5

High pH Reversed Phase Fractionation

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Samples were resuspended in 50 µL of 50 mM ammonium formate and fractionated offline with high pH C18 reversed phase (RP) chromatography [38 (link)] with the following changes. A Shimadzu Prominence HPLC (Shimadzu, Columbia, MD, USA) with a Hot Sleeve-25 L Column Heater (Analytical Sales & Products, Inc., Pompton Plains, NJ, USA) was used with a Security Guard precolumn housing a Gemini NX C18 cartridge (Phenomemex, Torrance, CA, USA) attached to a C18 XBridge column, 150 mm (column length) × 2.1 mm (internal diameter), 5 µm particle size (Waters Corporation, Milford, MA, USA). Buffer A was 20 mM ammonium formate, pH 10 in 98:2 water:acetonitrile, and Buffer B was 20 mM ammonium formate, pH 10 in 10:90 water:acetonitrile. The flow rate was 200 µL/min with a gradient from 2–7% buffer B over 0.5 min, 7–15% buffer B over 7.5 min, 15–35% buffer B over 45 min, and 35–60% buffer B over 15 min. Fractions were collected every 2 min, and UV absorbances were monitored at 215 nm and 280 nm. Peptide containing fractions were divided into two equally numbered groups, “early” and “late”. A volume equal to 15 milli-absorbance units of the first “early” fraction was concatenated with the first “late” fraction, and so on. Concatenated fractions were lyophilized and cleaned with Stop and Go Extraction Protocol (STAGE tip) using Waters Oasis MCX material.
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6

Synthesis and Characterization of Cy5-B12 Conjugate

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Cy5-B12 was synthesized through Huisgen/Sharpless ‘Click’ Chemistry47 ,48 (link). Cu(I) (1mg, 0.005mmol) and Tris[(1-benzyl-1H-1,2,3-triazol-4-yl)methyl]amine (3.5mg, 0.006mmol) were dissolved in 0.5mL DMF/H2O (4:1 v/v). Once color change occurred, the previously synthesized B12-Azide (3mg, 0.002mmol)49 (link) and Cyanine-5 alkyne (0.5mg, 0.0007mmol) (Lumiprobe) was dissolved in the solution and allowed to stir at room temperature overnight protected from light. This was purified through RP-HPLC on a Shimadzu Prominence HPLC using a C18 column (Eclipse XDB-C18 5 μm, 4.6 × 150mm). Solvents: A: 0.1% TFA water and B: Acetonitrile. Method: B%: 20-72% over 18min. tR: 4.7min. Yield: 94%. LC-MS analysis (Shimadzu LCMS-8040, Method: 0.1% Formic acid and 35% methanol water at 0.2mL/min, DL temp: 150°C, heat block temp: 400°C.): expected m/z: 2059 observed: 1031 [M+2H]+2, 1042 [M+Na+2H]+2, and 1050 [M+K+2H]+2. Emission and excitation were 645 and 682nm, respectively using a Varian Cary UV Spectrophotometer and Agilent Cary Eclipse Fluorescence Spectrophotometer, solvent H2O. See Figure 1 for more information.
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7

Characterization of Synthesized Compounds

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Example 1

All chemicals for synthesis were purchased from Alfa Aesar (Ward Hill, Mass.) or Aldrich (Milwaukee, Wis.). The compound identity was characterized by 1H NMR on a Varian (Palo Alto, Calif.) 400-MR spectrometer. The purities of synthesized compounds were determined by a Shimadzu Prominence HPLC with a Zorbax C18 (or C8) column (4.6—250 mm) monitored by UV at 254 nm. The purities of the reported compounds were found to be >95%.

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8

HPLC Purification of Compounds

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427 were purified using a Shimadzu Prominence
HPLC using a
C18 column (Eclipse XDB-C18 5 μm, 4.6 × 150 mm). Two differing
purification methods were used: A1, H2O + 0.1% TFA and
MeOH from 1% CH3OH/H2O + 0.1% TFA to 90% CH3OH/H2O + 0.1% TFA in 25 min; A2, H2O
+ 0.1% TFA and CH3CN from 1% CH3CN/H2O + 0.1% TFA to 70% CH3CN/H2O + 0.1% TFA in
15 min.
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9

Synthesis and Characterization of Compounds 1-40

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All chemicals were purchased from Alfa Aesar (Ward Hill, MA) or Aldrich (Milwaukee, WI). 1H and 13C NMR spectra were used for compound identification on a Varian (Palo Alto, CA) 400-MR spectrometer. Purification of reaction products were carried out by silica gel (200–400 mesh) column chromatography monitored by UV at 254 nm. Analytical high performance liquid chromatography (HPLC) was performed on Shimadzu Prominence HPLC with a Zorbax C18 (or C8) column (4.6 x 250 mm) monitored by UV at 254 nm. The purities of the reported compounds were found to be >95%. The synthesis and characterization of compounds 1–40 can be found in Experimental Section.
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10

Quantification of Vitamin E Congeners in Flour

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Vitamin E congeners were quantified in triplicate as previously described (Grebenstein & Frank, 2012 (link)). In brief, about 200 mg flour was weighed into a glass tube and 2 ml of ethanol (containing 1% ascorbic acid (w/v)), 900 µl of H2O, and 600 µl of KOH were added and samples saponified for 30 min at 70°C. Samples were then extracted three times with 2 ml of hexane and in total 5 of 6 ml added hexane was collected and evaporated. Samples were dissolved in 100 µl of ethanol and analyzed on a Shimadzu (Kyoto, Japan) Prominence HPLC equipped with an LC‐20 AT pump, a DGU‐14A degasser, a CTO‐10AS column oven (set to 40°C), cooled autosampler SIL‐20 AC HT (4℃), and an RF‐20A fluorescence detector. Tocopherols and tocotrienols were separated on a Phenomenex KinetexTM PFP column (2.6 µm, 150 × 4.6 mm; Phenomenex) using methanol/H2O (85:15, v/v) as eluent at a flow rate of 1.2 ml/min. The fluorescence detector was operated at an excitation wavelength of 296 nm and an emission wavelength of 325 nm. Peaks were recorded and integrated using Lab solution LC software (Shimadzu, Kyoto, Japan) and quantified against external calibration curves.
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